Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04143 ATGGCCTCAATGTTGAGATCCATCCTCATCACTCTCTTCACTACTTTCCTCATCTCTCACATTTCAGTGCACAAGATATCAGCAGCAACAGTAACATTTTCCAACAAATGTTCCCATCCAGTATGGCCAGCCATCCAGCCCGGCGCCGGAAAGCCCATACTAGCCCGCGGCGGCTTCAACCTCGCACCAAACAAAGCATACTCTCTCCAAGTCCCGCCTCTCTGGTCAGGCCGTTTCTGGGGCCGTCACGGCTGCACCTTCGACGCATCCGGCCACGGCCACTGCGCCACCGGAGACTGCGGCGGATCTCTCTTCTGCAACGGCATCGGCGGAGCACCACCGGCCACACTCGCTGAGTTCACGCTCGGAAAAGATCTGGATTTCTACGACGTAAGTCTCGTCGACGGTTACAACTTGCCGATTTCCATTACTCCGATGAAGGGATCTGGAAAGTGTAGCAACGCCGGTTGTGTGAGTGATCTGAACTTGATGTGTCCGGTGGGTTTGCAAGTGAGGTCACGCGATAATAAGCGCGTGGTGGCTTGTAAGAGTGCTTGTTCTGCTTTTAACTCGCCTAGGTATTGCTGTACTGGGAGCTTCGGAAGCCCACAGGCCTGTAAGCCCACTGCTTATTCTAGAATCTTCAAAACTGCTTGCCCAAAGGCCTACTCTTATGCCTATGATGATCCTACCAGTATTGCTACTTGCACCAATGCTAACTATTTGATCACTTTCTGCCCTCATCACCACCGTTGA 756 0.5265 MASMLRSILITLFTTFLISHISVHKISAATVTFSNKCSHPVWPAIQPGAGKPILARGGFNLAPNKAYSLQVPPLWSGRFWGRHGCTFDASGHGHCATGDCGGSLFCNGIGGAPPATLAEFTLGKDLDFYDVSLVDGYNLPISITPMKGSGKCSNAGCVSDLNLMCPVGLQVRSRDNKRVVACKSACSAFNSPRYCCTGSFGSPQACKPTAYSRIFKTACPKAYSYAYDDPTSIATCTNANYLITFCPHHHR 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04143 251 Gene3D Thaumatin 29 247 IPR037176 -
Vifa6g04143 251 FunFam Thaumatin-like protein 1a 29 247 - -
Vifa6g04143 251 SMART tha2 31 247 IPR001938 -
Vifa6g04143 251 ProSitePatterns Thaumatin family signature. 91 106 IPR017949 -
Vifa6g04143 251 PRINTS Pathogenesis-related protein signature 91 120 IPR001938 -
Vifa6g04143 251 PRINTS Pathogenesis-related protein signature 127 143 IPR001938 -
Vifa6g04143 251 PRINTS Pathogenesis-related protein signature 78 89 IPR001938 -
Vifa6g04143 251 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Vifa6g04143 251 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Vifa6g04143 251 CDD TLP-PA 30 246 - -
Vifa6g04143 251 PIRSF PR5 1 251 IPR001938 -
Vifa6g04143 251 Pfam Thaumatin family 35 247 IPR001938 -
Vifa6g04143 251 SUPERFAMILY Osmotin, thaumatin-like protein 29 248 IPR037176 -
Vifa6g04143 251 ProSiteProfiles Thaumatin family profile. 28 249 IPR001938 -
Vifa6g04143 251 PANTHER OS03G0233200 PROTEIN 17 247 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04143 Vifa-Chr6 1363051003 1363051881 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04143 16 248 Receptor kinase-like Gene Family AT5G38280 46.250 6.85e-67 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04143 - - qsu:111993320 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g04143 6 1363051003 1363051881 Vifa6g04143 6 1363051003 1363051881 ECH