Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04121 ATGAGCCAACCGGAGTTATCGGAGACTTACGCCTGCACGCCGTCCACCGAGCGTGGCCGCGGAATTCTCATCTCCGGCGACTCCAAGTCCAACTCCATCCTCTACACCAATGCTAGATCCGTTGTCATGATGAACCTCCAAAACCCCCTTCAAGTCTCCGTATACGGCGAACACGCTTACCCTGCCACCGTCGCCCGATTTTCCCCTAACGGCGAGTGGGTTGCGTCTGCTGACGTGTCGGGTACGGTGAGGATCTGGGGAACCCGCAACGACTTTGTTTTGAAGAAGGAGTTTCGTGTCTTGTCAGGTCGGATCGATGATCTTCAGTGGTCACCTGATGGTATCAGAATCGTTGCTTGCGGTGAAGCCAAAGGAAACTCCTTTGTTCGCGCTTTTATGTGGGATTCTGGGACTAATGTTGGTGAATTTGATGGGCACTCAAGGCGAGTTTTGAGTTGTGCATATAAACCCACAAGGCCTTTTCGGATTGTCACCTGTGGAGAGGATTTTCTGGTTAATTTTTATGAAGGACCGCCATTTAGATTTAAGCAATCTCACAGGGATCATTCGAATTTTGTCAACTGTGTAAGATATTCTCCAGATGGCAATAAATTTTTAACTGTAAGTTCTGACAAAAAGGGTATCATATTCGATGGAAAGACTGGAGAGAAGATTGGGGAGTTGTCTTCTGAAGGTGGCCATACTGGCAGTATTTATGCTGTTAGCTGGAGTACTGATGGAAAACAAGTGCTGACCGTATCTGCTGACAAGTCTGCAAAAGTGTGGGACATATCTGAGGATAATATTGGGAAGGTGAAGAAAACATTGATTTCTCCAGGCTCTGGCGGAATTGAAGACATGCTAGTAGGGTGCCTATGGTTGAACGATTATCTTGTCACTGTTTCTCTTGGTGGGACGATATCTATTTATTTTGCAAGTGATCTTGATAAAGCCCCAACATCATTTTCAGGACACATGAAAAATGTTTCCTCATTAACCATTCTTAGAAGTAACCCTAGAGTGCTCCTCTCTTGTAGTTATGATGGGTTAGTAGTTAAGTGGATTCAAGGGATTGGATATAGTGGTAAATTACAAAGGAAGGAGAATTCTCAAATCAAATCCTTAGCAGCTGCAGAAGAAGAGATTGTTACATCTGGGTTTGATAATAAGATTCAGAGGATTTCTTTACATGGGGATCAGTGTGGAGATGCTGAAGCCATTGATATAGGAACTCAACCAAAGGATTTTAGCATTGCACTTTCATCTCCCGAACTGGTTCTAGTTTCAATTGATTCAGGAGTTGTCATGCTGCGTGGTACAAAAGTTGTGTCAACCATTAATCTTGAATTTACTGTTTCGGCATCCATTGTCTCTCCTGATGGAAGTGAAGCCATTATTGGTGGGCAGGATGGTAAACTGCACATATATTCTATTTCTGGTGATACACTGGTTGAAGAGGCTGTCCTTGAGAAACATAGGGGTGCTGTTAGTGTTATACGGTATTCTCCAGATTTTTCAATGTTTGCATCCGGGGATGTCAATCGAGAAGCTGTTGTTTGGGACCGTGCCACCCGAGATGTGAAGCTCAAGAACATGCTGTACCATACTGCACGGATAAACTGTCTTGCTTGGTCTCCTGATAGCAGTAGGATTGCTACAGGATCTCTTGACACATGCGTTATTGTATATGAAATTGACCAACCTGTGTCCAGTAGAAATACCATAAAGGGCGCTCACTTAGGCGGGGTTTATGGGTTAGTATTCACTGATGAATATAGTCTGGTTAGCTCAGGCGAGGATGCTTTTATTCGTGTCTGGAAGATAACCCCTCCCTGA 1836 0.4434 MSQPELSETYACTPSTERGRGILISGDSKSNSILYTNARSVVMMNLQNPLQVSVYGEHAYPATVARFSPNGEWVASADVSGTVRIWGTRNDFVLKKEFRVLSGRIDDLQWSPDGIRIVACGEAKGNSFVRAFMWDSGTNVGEFDGHSRRVLSCAYKPTRPFRIVTCGEDFLVNFYEGPPFRFKQSHRDHSNFVNCVRYSPDGNKFLTVSSDKKGIIFDGKTGEKIGELSSEGGHTGSIYAVSWSTDGKQVLTVSADKSAKVWDISEDNIGKVKKTLISPGSGGIEDMLVGCLWLNDYLVTVSLGGTISIYFASDLDKAPTSFSGHMKNVSSLTILRSNPRVLLSCSYDGLVVKWIQGIGYSGKLQRKENSQIKSLAAAEEEIVTSGFDNKIQRISLHGDQCGDAEAIDIGTQPKDFSIALSSPELVLVSIDSGVVMLRGTKVVSTINLEFTVSASIVSPDGSEAIIGGQDGKLHIYSISGDTLVEEAVLEKHRGAVSVIRYSPDFSMFASGDVNREAVVWDRATRDVKLKNMLYHTARINCLAWSPDSSRIATGSLDTCVIVYEIDQPVSSRNTIKGAHLGGVYGLVFTDEYSLVSSGEDAFIRVWKITPP 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04121 611 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 576 611 - -
Vifa6g04121 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 576 611 IPR001680 GO:0005515
Vifa6g04121 611 Pfam WD domain, G-beta repeat 65 86 IPR001680 GO:0005515
Vifa6g04121 611 Pfam WD domain, G-beta repeat 185 213 IPR001680 GO:0005515
Vifa6g04121 611 Pfam WD domain, G-beta repeat 535 563 IPR001680 GO:0005515
Vifa6g04121 611 Pfam WD domain, G-beta repeat 228 263 IPR001680 GO:0005515
Vifa6g04121 611 ProSitePatterns Trp-Asp (WD) repeats signature. 250 264 IPR019775 -
Vifa6g04121 611 SUPERFAMILY WD40 repeat-like 31 354 IPR036322 GO:0005515
Vifa6g04121 611 FunFam Actin-interacting protein 1 13 339 - -
Vifa6g04121 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 532 573 IPR001680 GO:0005515
Vifa6g04121 611 Gene3D - 13 339 IPR015943 GO:0005515
Vifa6g04121 611 FunFam Actin-interacting protein 1 340 608 - -
Vifa6g04121 611 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 1 608 - -
Vifa6g04121 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 227 IPR001680 GO:0005515
Vifa6g04121 611 CDD WD40 58 351 - -
Vifa6g04121 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 231 272 IPR001680 GO:0005515
Vifa6g04121 611 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 489 521 - -
Vifa6g04121 611 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 231 265 - -
Vifa6g04121 611 SUPERFAMILY WD40 repeat-like 296 608 IPR036322 GO:0005515
Vifa6g04121 611 Gene3D - 9 608 IPR015943 GO:0005515
Vifa6g04121 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 55 96 IPR001680 GO:0005515
Vifa6g04121 611 SMART WD40_4 221 263 IPR001680 GO:0005515
Vifa6g04121 611 SMART WD40_4 315 355 IPR001680 GO:0005515
Vifa6g04121 611 SMART WD40_4 179 218 IPR001680 GO:0005515
Vifa6g04121 611 SMART WD40_4 526 564 IPR001680 GO:0005515
Vifa6g04121 611 SMART WD40_4 91 135 IPR001680 GO:0005515
Vifa6g04121 611 SMART WD40_4 482 521 IPR001680 GO:0005515
Vifa6g04121 611 SMART WD40_4 568 607 IPR001680 GO:0005515
Vifa6g04121 611 SMART WD40_4 439 477 IPR001680 GO:0005515
Vifa6g04121 611 SMART WD40_4 136 176 IPR001680 GO:0005515
Vifa6g04121 611 SMART WD40_4 48 87 IPR001680 GO:0005515
Vifa6g04121 611 SMART WD40_4 269 311 IPR001680 GO:0005515
Vifa6g04121 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 489 521 IPR001680 GO:0005515
Vifa6g04121 611 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 532 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04121 Vifa-Chr6 1356730470 1356735397 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04121 117 295 Miscellaneous Gene Families AT5G08390 25.140 1.84e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04121 K24736 - gmx:100794702 1110.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g04121 6 1356730470 1356735397 Vifa6g04121 6 1356730470 1356735397 ECH