Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04113 ATGACAAGTGAAAGAAAAGAGTTAGTGGTAGCAGAAGTGAAGAGGCAACTATGGTTAGCACTTCCTCTCACCTCAGTTGGTATCCTACAATATGTCCTACAAACCATTTCTATCATGTTTGTTGGACATCTTGGTACTCTTCCTCTTTCAGGTGCGTCGATGGCCACTTCCTTCGCAGCTGTTACCGGCTTCACCTTACTGATGGGAATTGCGAGTGCATTGGATACATTTTGTGGTCAATCAAATGGAGCAGGACAGTACCACATGCTTGGAATACACATGCAAAGATCAATGCTTGTTGTTTCAATTGTCAGTGTATTCCTTTCAATCATATGGGCTAATACAGAATCAATTCTAGTAGCTATACATCAAGACAAAGCCATTTCCAAAGAAGCTGGTTCTTATGCATTTTTCATGATCCCAAGTTTGTTTGCATATGGTCTTCTTCAGTGCATTCTCAAGTTCTTGCAAACACAAAACATTGTTCTACCAATGGTGCTAACTTCTGCAATTGCAGCTTTGCTTCATACTCTTCTATGTTGGGTTTTTGTTTTTGAACTAAAACTTGGAAGTAAAGGAGCAGCTATATCTCTTTCTATATGTTATTGGGTCAATGTGCTGTTGATTTCACTCTATGTCAAATTCTCTTCTTCTTGTAAACAAACATGGACAGGCTTTTCAAAGAAAGCCCTTCGGGATCTCTCCGAGTTCCTTAAACTCGCTGTTCCTTCAGCTTTCATGCTCTGTTTGAAAGTGTGGACATTTGAATTGATGGTTCTCATGTCTGGTCTTCTTCCAAATCCAGTATTAGAAACTTCAGTGCTCTCAATATGCCTTAATACATTTGGTCTAGCTTGGATGATCCCTTTTGGATGCAGTGCTGCAGTAAGTATACGAGTATCGAATGAACTGGGCGGCGGAAATCCGAGAGGTGCGAGTCTATCGGTTCGTGTGGGGCTATCTACCGCCTTCATTGAAGGGTTGTTTATGGTTCTAAGCATGATTCTAGCAAGAAATGTGTGGGGACAAGTATATAGTAATGACAAACAAGTTATCAGATATGTGTCAGACATGATGCCAATTTTGGCTATTTCCAGTTTTCTTGATGCCATCCAAAGCGCACTTTCAGGTGTTCTTGCAGGATGCGGATGGCAGAAGATCGGTGCCTATGTGAATCTCGGATCATTTTATGCAATAGGTGTACCATGTGCAGTTACATTAGCCTTTTTTCTACGCATGCATGCGACGGGACTGTGGTTGGGGATCATTTCAGCATTTACTGTCCAAACCTTACTTTACAGTATTTTTACAATTCGTTCGAACTGGGAAGAAGAAGCAAGGAAAGCTCAAAGCAGAGTTGATCGCTCGATCATGTTGCCAAATACTACTCTCAGAGACAGCATCTCACCATCTCAAAAAACTTGA 1425 0.4119 MTSERKELVVAEVKRQLWLALPLTSVGILQYVLQTISIMFVGHLGTLPLSGASMATSFAAVTGFTLLMGIASALDTFCGQSNGAGQYHMLGIHMQRSMLVVSIVSVFLSIIWANTESILVAIHQDKAISKEAGSYAFFMIPSLFAYGLLQCILKFLQTQNIVLPMVLTSAIAALLHTLLCWVFVFELKLGSKGAAISLSICYWVNVLLISLYVKFSSSCKQTWTGFSKKALRDLSEFLKLAVPSAFMLCLKVWTFELMVLMSGLLPNPVLETSVLSICLNTFGLAWMIPFGCSAAVSIRVSNELGGGNPRGASLSVRVGLSTAFIEGLFMVLSMILARNVWGQVYSNDKQVIRYVSDMMPILAISSFLDAIQSALSGVLAGCGWQKIGAYVNLGSFYAIGVPCAVTLAFFLRMHATGLWLGIISAFTVQTLLYSIFTIRSNWEEEARKAQSRVDRSIMLPNTTLRDSISPSQKT 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04113 474 CDD MATE_eukaryotic 12 448 IPR045069 GO:0042910|GO:1990961
Vifa6g04113 474 NCBIfam MATE family efflux transporter 26 419 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa6g04113 474 Pfam MatE 243 405 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa6g04113 474 Pfam MatE 23 182 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa6g04113 474 PANTHER MULTIDRUG RESISTANCE PROTEIN 7 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04113 Vifa-Chr6 1353604883 1353607001 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04113 K03327 - gmx:100776083 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g04113 6 1353604883 1353607001 Vifa6g04113 6 1353604883 1353607001 ECH