Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04109 ATGCCACTACCGATGCGAATTCGAGTCCCCGTACTCCCATACTCCGGCATCTTCACAACCGCCGCTCGTCGTTTCATAACCGCCACTTCCCTTACACCAACAACCATAAACCTCCGCATTCGCCTCTCATCTTCCTTAACCGCCATCCACCACAGATATGCCGCGCCTCTCAGATACCGAACCTTTGCTCTTCCGCTTTTTCACCAGCAAAGTTCCACTTACGGCCGTTTCGCCTTTCACGATGTCTCCAGCGATGAGTCCGACCTCGAATTCGCTCCTCCTCCCTCTCAATCTCGCCCTCAACAACAGTTGGGTGATTCGACACTTGAAAACATTGACTCTTGGAGATGGAAACTCACCATGCTTCTTCGGAATAAAGACGAGCAAGAAGTTGTGTCCAATGAGAAAAAGGACCGTCGTGATTTTCTACAACTTGAAACTTTAGCTACTAGGATGGGTTTATACAGTCGACAGTATGCAAAAGTTATTGTGTTTAGCAAGGTGCCTTTGCCAAATTATCGCCCTGATCTTGATGATAAGCGTCCGTTGAGAGAGGTAACCTTACCATTTGGTGTTCATAGAGAAGTAGACACTCATCTTCTTGCTCATCTTTCACATAAGGCTACAAAAAGAGTAGGCTCTTTGGATGATTCCTTGCGTCGATCAAAGGATGGTGGTAGCATTCCTGCTGATGAAGAGATTTATGGGCATCCAGAACCCATGAGCCATATTAGTGTTGCCAAAGAGAAAATCCTTCAACGGAAAAGTTTGCAACTGCGCCATCAACAACAAAGCTGGCAGGAATCTCCCGAAGGGAAAAATATGCTTGAATTTCGCCGAAGTCTTCCTGCATTCAAAGAGAAAGATTCATTTTTGAAAGCCGTTTCAGAGAATCAGGTCATTGTTGTCTCGGGTGAAACTGGTTGTGGTAAGACTACACAACTTCCTCAATACATATTAGAATCTGAGATTGAAGCTGGACGTGGAGCTCTATGTAGCATAATTTGTACTCAGCCTAGAAGAATATCTGCTATATCCGTTTCTGAAAGAGTTGCAGCAGAACATGGGGAAAAATTGGGAGAATCTGTTGGTTATAAAGTTCGGTTGGAAGGTATGAGAGGAAGGGATACTCGTCTTCTTTTTTGCACCACAGGCGTGTTATTGCGGAGACTACTTGTGGATAGAAGTTTAAAAGGTGTAACTTATGTTATTGTTGATGAAATTCATGAACGTGGAATGAATGAAGATTTTCTTCTCATTGTCCTGAAGGATCTTCTCCCTCGTCGACCTGATTTAAGATTAATTTTGATGAGTGCAACCTTAAATGCTGAGCTTTTTTCTTCGTATTTTGATGGTGCCCCAACTATGCATATCCCGGGATTTACTTTTCCAGTTCGAGCACAATTTCTTGAGGATATTCTGGAAAGGACTGGATATCGTTTGACTCCTTATAATCAAATTGATGACTATGGTCAAGATAAATCATGGAAAATGCAGAAGCAAGCTCAATCTTTCAAAAAAAGAAAGAGCCAGATTGTTTCTGCTGTTGAGGATGCATTAGAGGTTGCGGACTTTAAGGGGTATAGCCTACGCACTAAGGAGTCAATGTCCTGCTGGAACCCTGACTCAATTGGTTTTAACCTTATTGAACATGTGCTTTGCCACATTGTTAAGAATGAAAGGCCAGGTGCTGTTTTGGTTTTTATGACTGGTTGGGATGATATAAACTCTTTGAAGGATCAACTCCATGCTCATCCTTTGTTGGGTGATCAGAGCCGGGTCTTACTTCTTGCATGCCACGGCTCTATGTCCAGCTCAGAGCAGAAATTAATATTTGGAAATCCTGAAGGAGGGGTGAGGAAAATTGTTCTAGCTACTAATATGGCAGAGACTAGTATTACCATCAATGATGTTGTCTTTGTGGTTGATTGTGGAAAAGCAAAAGAGACATCATACGATGCATTAAATAACACTCCTTGTTTGCTTCCATCCTGGATCTCAAAAGCTGCTGCCCGACAGAGAAAAGGAAGGGCTGGCCGTGTTCAATCTGGCGAATGCTTTCATCTTTATCCCAGATGTGTTTATGATGCTTTTGCTGATTATCAACTGCCAGAGCTTTTAAGAACACCATTACAGTCCTTATGTCTACAAATAAAAAGTCTACAACTTGGAAGCATCTCTGAGTTTTTGTCTAGTGCTCTCCAGCCACCGGAGGCTCTTTCGGTTCAAAATGCTGTTGAATATTTGAAGATTATCGGCGCCTTAGATGAGAATGAAAATCTTACAGTTCTAGGGCGCAAATTGTCAATGCTTCCCGTAGAGCCTAAGCTTGGCAAGATGCTCATCTTGGGAGCTATTTTCAACTGTTTGGATCCCATATTGACTGTTGTTGCTGGGCTTAGTGTGAGAGATCCATTTGTTGTGCCGGCTGACAAGAAGGATCTTGCAGAATCTGCCAAGGCCCAGTTTGCTGCTCGTGCATACAGTGATCATCTTGCACTTATCCGGGCTTATGATGGATGGAAAGATGCTGAAGCACAGCAAGCTGGTTACGAGTACTGTTGGCGTAATTTTCTTTCTTCTCAAACTCTTAGGGCTATTGACTCTCTTCGAAAGCAATTCTTTCACTTGCTCAAAGATATTGGTCTGGTTGGCAACAATTCTGAAACCAACAATAAATGGAGTAATGAGGAGCATCTGCTCCGAGCAGTTATCTGTGCGGGTTTGTTTCCGGGAATATCCTCTGTTGTGAACAAGGAAAAGTCAATAGCACTGAAAACAATGGAGGATGGTCCGGTTCTTCTGTATGCTAACTCTGTAAATGGAAGTGTACCCAAAATTCCATACCCATGGTTAGTGTTTAATGAAAAGATTAAAGTGAATACAGTATTCCTTAGGGATTCAACTGGTGTATCTGATTCTATGCTGCTCTTATTTGGCGGGAACATATCCAAAGGTGGACTGGATGGTCACCTAAAAATGTTGGGAGGGTATCTGGAATTTTTCATGAAACCAGAATTAGCCAAGACTTACTCAACTTTAAAGAGGGAACTGGAGGAATTGATACAGAAAAAACTTCTGGATCCTATGTTGGATAGACAATCGCACAATGAGCTTCTTTCAGCTGTAAGATTGTTGGTATCAGAGGACAACTGTGATGGCAGATTTGTCTATGGTCACCAGGTTCTACCACAGTTGAAGAAGGCAGAGAAATCCAAAAGTGGCGATGGACTCAAGGGTGATAATTCTAAAAATCAGCTTCAAACATTCCTTAGCAGGGCTGGACATCAGCCACCAACTTACAAAACACAACAACTGAGAAACACCCAATTCCGTTCTACTGTCATATTCAATGGCTTGGATTTTGTTGGCCAGTCATGCAGCAGCAAGAAACTAGCAGAAAAATCTGCTGCTGCTGAGGCTATTCTATGGTTAAAAGGGGATAATACCCATTCATATGGTGATATGAGTCATGCATCTGTGTTGTTGAAGAAAAGCAACAAGAAAAGTAGGAAAAAATCGTTTAGTGATGCTAAATGGGGTTAA 3546 0.4241 MPLPMRIRVPVLPYSGIFTTAARRFITATSLTPTTINLRIRLSSSLTAIHHRYAAPLRYRTFALPLFHQQSSTYGRFAFHDVSSDESDLEFAPPPSQSRPQQQLGDSTLENIDSWRWKLTMLLRNKDEQEVVSNEKKDRRDFLQLETLATRMGLYSRQYAKVIVFSKVPLPNYRPDLDDKRPLREVTLPFGVHREVDTHLLAHLSHKATKRVGSLDDSLRRSKDGGSIPADEEIYGHPEPMSHISVAKEKILQRKSLQLRHQQQSWQESPEGKNMLEFRRSLPAFKEKDSFLKAVSENQVIVVSGETGCGKTTQLPQYILESEIEAGRGALCSIICTQPRRISAISVSERVAAEHGEKLGESVGYKVRLEGMRGRDTRLLFCTTGVLLRRLLVDRSLKGVTYVIVDEIHERGMNEDFLLIVLKDLLPRRPDLRLILMSATLNAELFSSYFDGAPTMHIPGFTFPVRAQFLEDILERTGYRLTPYNQIDDYGQDKSWKMQKQAQSFKKRKSQIVSAVEDALEVADFKGYSLRTKESMSCWNPDSIGFNLIEHVLCHIVKNERPGAVLVFMTGWDDINSLKDQLHAHPLLGDQSRVLLLACHGSMSSSEQKLIFGNPEGGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRKGRAGRVQSGECFHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSSALQPPEALSVQNAVEYLKIIGALDENENLTVLGRKLSMLPVEPKLGKMLILGAIFNCLDPILTVVAGLSVRDPFVVPADKKDLAESAKAQFAARAYSDHLALIRAYDGWKDAEAQQAGYEYCWRNFLSSQTLRAIDSLRKQFFHLLKDIGLVGNNSETNNKWSNEEHLLRAVICAGLFPGISSVVNKEKSIALKTMEDGPVLLYANSVNGSVPKIPYPWLVFNEKIKVNTVFLRDSTGVSDSMLLLFGGNISKGGLDGHLKMLGGYLEFFMKPELAKTYSTLKRELEELIQKKLLDPMLDRQSHNELLSAVRLLVSEDNCDGRFVYGHQVLPQLKKAEKSKSGDGLKGDNSKNQLQTFLSRAGHQPPTYKTQQLRNTQFRSTVIFNGLDFVGQSCSSKKLAEKSAAAEAILWLKGDNTHSYGDMSHASVLLKKSNKKSRKKSFSDAKWG 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04109 1181 Gene3D - 542 700 IPR027417 -
Vifa6g04109 1181 SMART helicmild6 576 682 IPR001650 -
Vifa6g04109 1181 SUPERFAMILY dsRNA-binding domain-like 1065 1146 - -
Vifa6g04109 1181 CDD DEXHc_RHA-like 298 458 - -
Vifa6g04109 1181 Gene3D - 239 460 IPR027417 -
Vifa6g04109 1181 MobiDBLite consensus disorder prediction 86 105 - -
Vifa6g04109 1181 FunFam DExH-box ATP-dependent RNA helicase DExH3 544 700 - -
Vifa6g04109 1181 Coils Coil 1004 1024 - -
Vifa6g04109 1181 Gene3D - 1066 1150 - -
Vifa6g04109 1181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 880 IPR027417 -
Vifa6g04109 1181 CDD SF2_C_RHA 536 690 - -
Vifa6g04109 1181 FunFam DExH-box ATP-dependent RNA helicase DExH3 237 460 - -
Vifa6g04109 1181 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 901 983 IPR011709 -
Vifa6g04109 1181 MobiDBLite consensus disorder prediction 90 105 - -
Vifa6g04109 1181 Pfam Helicase conserved C-terminal domain 550 681 IPR001650 -
Vifa6g04109 1181 Gene3D - 724 827 - -
Vifa6g04109 1181 FunFam Putative ATP-dependent RNA helicase DHX36 724 828 - -
Vifa6g04109 1181 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1082 1147 IPR014720 -
Vifa6g04109 1181 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 548 722 IPR001650 -
Vifa6g04109 1181 SMART DRBM_3 1083 1146 IPR014720 -
Vifa6g04109 1181 Pfam DEAD/DEAH box helicase 292 443 IPR011545 GO:0003676|GO:0005524
Vifa6g04109 1181 MobiDBLite consensus disorder prediction 215 230 - -
Vifa6g04109 1181 SMART ultradead3 280 476 IPR014001 -
Vifa6g04109 1181 SMART ha2_5 744 835 IPR007502 GO:0004386
Vifa6g04109 1181 Pfam Helicase associated domain (HA2) 745 820 IPR007502 GO:0004386
Vifa6g04109 1181 MobiDBLite consensus disorder prediction 215 238 - -
Vifa6g04109 1181 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 292 459 IPR014001 -
Vifa6g04109 1181 PANTHER ATP-DEPENDENT RNA HELICASE 242 1020 - -
Vifa6g04109 1181 Pfam Double-stranded RNA binding motif 1083 1145 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04109 Vifa-Chr6 1353061670 1353075760 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04109 K14442 - gmx:100791006 1863.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g04109 6 1353061670 1353075760 Vifa6g04109 6 1353061670 1353075760 ECH