Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04108 ATGGCGGCCCCACCACACCGTTCCTCCAAAACCGAATCCTACACCGACAACAAACGCAAAGACGACGTCCGTCAATCCAACATCATCGCCGCCCGCTCCGTCGCCAACGCCGTTCGCACCAGTCTCGGTCCCAAAGGCATGGACAAAATGATCTCCACCTCTTCCAACGAAGTCATCATCACCAACGACGGCGCCACCATCCTCCACAAGATGCAGGTCCTCCAACCCGCCGCTAAGATGCTCGTCGAACTCTCCAAATCTCAAGACTCCGCCGCTGGTGACGGTACCACCACCGTCGTCGTCATCGCCGGTGCGCTTCTCGAAAAATGTCTCCTCCTCCTCTCTCATGGAATCCACCCCACCGTGATCTCCGATTCCCTCCATAAAGCCTCCGTCAAAGCTGTTGACATCCTCACCGCCATGGCTGTCCCGGTCGAACTCTCAGACCGTGAATCGCTTGTCAAATCGGCTAGCACCTCGCTTAACAGCAAGGTTGTTAGTCAGTACTCTTCGCTTCTCGCTCCGATCGCCGTCGACTCGGTTCTCTCTGTCGTGGATTCTGACAAACCTAACATGGTGGATCTCCGTGATGTCAAGATTGTGAAGAAGCTTGGTGGGACTGTTGATGATACTGAGCTTGTCAAGGGTTTGGTGTTTGATAAGAAAGTTAGCCATGCTGCTGGTGGACCTACACGTATGGAGAATGCCAAGATTGCTGTGATTCAGTTTCAGATTTCGCCTCCCAAGACTGATATTGAACAGAGTATTGTGGTGAGTGATTATTCTCAGATGGATAGGATTTTGAAGGAAGAGAGGAGTTACATTTTGGGTATGATTAAGAAGATTAAAGCAACCGGTTGTAATGTGTTGTTGATTCAGAAGAGTATTTTGAGAGATGCTGTTACTGATTTGTCTTTGCATTACCTTGCTAAAGCTAAGATTTTGGTGATTAAGGATGTTGAACGCGATGAGATTGAGTTTATTACCAAGACTCTTAATTGTTTGCCTATTGCTAATATTGAGCATTTTCGTGTTGAGAAGTTGGGTTATGCTGATCTTGTGGAGGAGCTTTCACTTGGGGATGGGAAGGTTGTGAAGATTACGGGGATTAAGGATATGGGAAAGACCACGACCGTGCTTGTTCGTGGATCCAATGCACTTGTGCTTGATGAGGCGGACAGGAGTCTGCATGATGCTTTGTGTGTTGTTAGGTGTTTGGTTGCGAAGAGGTTTTTGATAGCTGGTGGTGGTGCGCCGGAGATAGAGTTGTCTAGGCAATTGGGTGCTTGGGCGAAGGTGTTGCATGGAATGGAGGGTTACTGCATCAGAGCATTTGCTGAGGCACTTGAAGTCATTCCTTATACTTTGGCTGAGAATGCTGGTTTGAATCCGATTGCAATTGTTACTGAGCTGAGGAATCGTCATGCGCAGGGTGAGATAAACGCTGGAATCAATGTGAGGAAAGGTCAAATTACAAACATCCTGGAAGAGAATGTGGTGCAGCCACTGCTTGTAAGCACAAGTGCTATAACCTTGGCAACAGAGTGCGTGAGGATGATTTTGAAGATTGATGATATTGTCACTGTGAGGTAG 1593 0.4809 MAAPPHRSSKTESYTDNKRKDDVRQSNIIAARSVANAVRTSLGPKGMDKMISTSSNEVIITNDGATILHKMQVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLEKCLLLLSHGIHPTVISDSLHKASVKAVDILTAMAVPVELSDRESLVKSASTSLNSKVVSQYSSLLAPIAVDSVLSVVDSDKPNMVDLRDVKIVKKLGGTVDDTELVKGLVFDKKVSHAAGGPTRMENAKIAVIQFQISPPKTDIEQSIVVSDYSQMDRILKEERSYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKAKILVIKDVERDEIEFITKTLNCLPIANIEHFRVEKLGYADLVEELSLGDGKVVKITGIKDMGKTTTVLVRGSNALVLDEADRSLHDALCVVRCLVAKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCIRAFAEALEVIPYTLAENAGLNPIAIVTELRNRHAQGEINAGINVRKGQITNILEENVVQPLLVSTSAITLATECVRMILKIDDIVTVR 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04108 530 PANTHER CHAPERONIN 17 527 IPR017998 GO:0140662
Vifa6g04108 530 MobiDBLite consensus disorder prediction 1 22 - -
Vifa6g04108 530 ProSitePatterns Chaperonins TCP-1 signature 1. 39 51 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Vifa6g04108 530 CDD TCP1_delta 15 529 IPR012717 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Vifa6g04108 530 SUPERFAMILY GroEL apical domain-like 210 383 IPR027409 -
Vifa6g04108 530 ProSitePatterns Chaperonins TCP-1 signature 3. 88 96 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Vifa6g04108 530 FunFam T-complex protein 1 subunit delta 215 373 - -
Vifa6g04108 530 NCBIfam thermosome subunit beta 17 528 - -
Vifa6g04108 530 Gene3D - 144 410 IPR027410 -
Vifa6g04108 530 SUPERFAMILY GroEL-intermediate domain like 147 408 IPR027410 -
Vifa6g04108 530 SUPERFAMILY GroEL equatorial domain-like 16 528 IPR027413 -
Vifa6g04108 530 Gene3D - 31 527 IPR027413 -
Vifa6g04108 530 NCBIfam thermosome subunit alpha 15 528 - -
Vifa6g04108 530 Gene3D GroEL 215 374 IPR027409 -
Vifa6g04108 530 NCBIfam T-complex protein 1 subunit delta 16 529 IPR012717 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Vifa6g04108 530 PRINTS Tailless complex polypeptide 1 (chaperone) signature 88 107 IPR017998 GO:0140662
Vifa6g04108 530 PRINTS Tailless complex polypeptide 1 (chaperone) signature 58 76 IPR017998 GO:0140662
Vifa6g04108 530 PRINTS Tailless complex polypeptide 1 (chaperone) signature 36 52 IPR017998 GO:0140662
Vifa6g04108 530 PRINTS Tailless complex polypeptide 1 (chaperone) signature 378 400 IPR017998 GO:0140662
Vifa6g04108 530 PRINTS Tailless complex polypeptide 1 (chaperone) signature 412 424 IPR017998 GO:0140662
Vifa6g04108 530 Pfam TCP-1/cpn60 chaperonin family 34 528 IPR002423 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04108 Vifa-Chr6 1353042919 1353044511 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04108 198 424 EF-hand Containing Proteins AT3G14270 25.306 9.76e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04108 K09496 - gmx:100127404 952.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g04108 6 1353042919 1353044511 Vifa6g04108 6 1353042919 1353044511 ECH