Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04105 ATGCATAAACACGGTGGAAAGAAATTTAAGCAATCAAACTCCAAATCTAGTACAGAACATTTACAAAGAACCAGTCCAAGCATTTCACTTCACGATGGCGGCTTCACTGGCCGCCAACCAGAAGCTTCTCCGGCAACGGGGAGCACCGGTCTATGCGGCAAAAACAGCTTTGAGGCTGGAACCTCTAGCAGGGGCAAGGAAATGTCGAGGTTGATGCTGAATCCGATCAAGAATCACAAGCCTGAAACGTATGAGGACATGGAATTGGATGTTTCTTCTTTGCTTCTCAGCTCGTTGGAGATGCACCTTCCGAGTTACTTGCTCGGTGCGTCTCGCAAGAATAAAGCTTCATACATGCGCGGTATTTTGAAAGATTATGTGCCTCCAGCCTTGCGCTATAGGGATCAAAAGCAAAAAGAATATAGAGAGAAGATAATGTCAAATTATCAGCCTCTGCATCGAGAGTTGTACACTATTGATCCCGTGGCATTCTTTGTACCTACATTTCTGAAAGCAATTAATGATAATACGGAACAAAGCTTTAGAAGTATAATGTCTGAACCCACCCCAGGCATTTTTACATTTGAAATGCTTCAACCACGTTTTTGTGAGTTAATGATAACAGAGGTTGAACATTTTGAGAAGTGGGCTGACAGAACAAAACTCAATGTTATGCGTCCCAATACAATGACTCAATATGGTGCTGTACTAGATGACTTTGGCCTTCAAACCATGCTTAAGAAGCTTATGGAGGATTTTATTTCTCCATTGTCAAAAGTGTTCTATGCAGAAGTTGGTGGATCAACCCTGGATTCTCACCACGGGTTTATTGCTGAATTTGGTACACATAGAGATGTTGATATGGAATTCCATGTGGATGACTCTGAAGTTACCTTAAACGTTTGCCTGGGTAGGCAATTTTCTGGAGGAGAGTTGTATTTTCGGGGAATGCGATGCGATAAACATTTAAATACAATGGGTCATTCAGAGGAGATCTTTGATCATTCGCATGTCCCTGGTTGTGCTGTGCTTCATCATGGTCGTCATCGCCATGGTGCTAGAGCCACAGTTGCTGGTCATCGGGTCAACCTACTTCTGTGGTGCAAAAGTTCAGTTTTTAGAGAAATGCAAAAGTTTAAAAGAGGCTTCTCTAGCTGGTGTGTGGAGTGCAATCAAGAGAAGAAAGCCAAGGAAGATAAGCTGATCACTACCGGAATGGAACTGTTGACGAGGTAA 1236 0.4288 MHKHGGKKFKQSNSKSSTEHLQRTSPSISLHDGGFTGRQPEASPATGSTGLCGKNSFEAGTSSRGKEMSRLMLNPIKNHKPETYEDMELDVSSLLLSSLEMHLPSYLLGASRKNKASYMRGILKDYVPPALRYRDQKQKEYREKIMSNYQPLHRELYTIDPVAFFVPTFLKAINDNTEQSFRSIMSEPTPGIFTFEMLQPRFCELMITEVEHFEKWADRTKLNVMRPNTMTQYGAVLDDFGLQTMLKKLMEDFISPLSKVFYAEVGGSTLDSHHGFIAEFGTHRDVDMEFHVDDSEVTLNVCLGRQFSGGELYFRGMRCDKHLNTMGHSEEIFDHSHVPGCAVLHHGRHRHGARATVAGHRVNLLLWCKSSVFREMQKFKRGFSSWCVECNQEKKAKEDKLITTGMELLTR 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04105 411 Gene3D q2cbj1_9rhob like domain 192 370 - -
Vifa6g04105 411 MobiDBLite consensus disorder prediction 11 32 - -
Vifa6g04105 411 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 271 370 IPR005123 -
Vifa6g04105 411 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 29 400 - -
Vifa6g04105 411 MobiDBLite consensus disorder prediction 1 66 - -
Vifa6g04105 411 MobiDBLite consensus disorder prediction 41 63 - -
Vifa6g04105 411 SMART p4hc 190 369 IPR006620 GO:0005506|GO:0016705|GO:0031418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04105 Vifa-Chr6 1352335352 1352343014 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04105 - - mtr:11410149 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g04105 6 1352335352 1352343014 Vifa6g04105 6 1352335352 1352343014 ECH