Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03940 ATGAACATTGGAACATGTTCGATTCTACGGTTCCAATTTCCAATCTGGAACTTCAGAAAACCCCTAATCTCTACGCGTTTCAATATGCGTTTGTTATCTGTTCGAAATTCCTCAGCTTCATCCATTGCCACCACCACCACTGAACCCACAAACTCGAAGAAGAACGAACCCTGGTTGATCGTTGGCCTCGGTAATCCCGGTAAAAAGTACGCTGCTACACGCCACAATGTGGGATTTGAAATGGTTGATGCTATAGCTGAAGCTGAAGGGATATCTATGACTAGTGTTTCCTTCAAAGCTCTTTTTGGAAAAGGTTTTATAGGCGATGTACCAGTATTACTTGCAAAACCACAGACATTTATGAATGCAAGTGGTGAATCTGTAAGTCTCATGTCTAGAGAATCTTCAGATGTTGGGGCCATAGTTTCATATTATAAGATTCCACTGAAGCAAGTAATTGTGATCTTTGACGACATGGACTTGCCTTTTGCTAAACTGCGGCTTCTACCAAAGGGTGGACATGGAGGTCACAATGGAATGAAAAGTGTTATTAATCACTTAAAAGGGAACTCTGGTTTTCCTCGCTTAAGAATTGGCATTGGACGACCTCCAGGGAAAATGGATCCTATCTCATTTGTTCTTCGACAATTCACTAAACAGGAAAGGGAAGAACTGAATTTTACCCTACAACATGGATTAGAAGCCGTGCGGATTATTTTGTTGGAGGGATTTGATAAAGGCGCAACATTTGTTAATACCGCCAAAAAGATAGAGCAAATAGGCTAA 786 0.4109 MNIGTCSILRFQFPIWNFRKPLISTRFNMRLLSVRNSSASSIATTTTEPTNSKKNEPWLIVGLGNPGKKYAATRHNVGFEMVDAIAEAEGISMTSVSFKALFGKGFIGDVPVLLAKPQTFMNASGESVSLMSRESSDVGAIVSYYKIPLKQVIVIFDDMDLPFAKLRLLPKGGHGGHNGMKSVINHLKGNSGFPRLRIGIGRPPGKMDPISFVLRQFTKQEREELNFTLQHGLEAVRIILLEGFDKGATFVNTAKKIEQIG 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03940 261 Gene3D - 43 255 IPR036416 GO:0004045
Vifa6g03940 261 SUPERFAMILY Peptidyl-tRNA hydrolase-like 57 252 IPR036416 GO:0004045
Vifa6g03940 261 Pfam Peptidyl-tRNA hydrolase 59 246 IPR001328 GO:0004045
Vifa6g03940 261 ProSitePatterns Peptidyl-tRNA hydrolase signature 1. 70 83 IPR018171 GO:0004045
Vifa6g03940 261 FunFam Peptidyl-tRNA hydrolase 54 255 - -
Vifa6g03940 261 ProSitePatterns Peptidyl-tRNA hydrolase signature 2. 173 183 IPR018171 GO:0004045
Vifa6g03940 261 Hamap Peptidyl-tRNA hydrolase [pth]. 57 245 IPR001328 GO:0004045
Vifa6g03940 261 NCBIfam aminoacyl-tRNA hydrolase 58 237 IPR001328 GO:0004045
Vifa6g03940 261 PANTHER PEPTIDYL-TRNA HYDROLASE 53 252 IPR001328 GO:0004045
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03940 Vifa-Chr6 1303842303 1303845726 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03940 K01056 - gmx:100526866 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03940 6 1303842303 1303845726 Vifa6g03940 6 1303842303 1303845726 ECH