Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03938 ATGGCTTCTTCAACTTCTTCTTCTTGTTGCCTCTTCCCCTCTTTCATCTCATCCAACGCCAAACGCGTCCCAATCCAAATCTGCTTCAACTTCACAGTCCCCAAACCTTCTTCACAGATTCACTGCCAGTATCATTCAAATTCCAATTCTTCTACAAATCATTCTCACGGAATCGAACGCCGCTTGGTTGAAGCATTCGATCAATCCCGCGCATCTTCCGAGAGATTCACCGTAGCGTCGTATAACATACTTGCTGATAGAAATGCTTCGCAACATCCTGATTTATACGTTAACACTCCTTCTCGTTATATCCATTGGGATCGAAGGAAAAAGATTCTTTCTCAAGAATTCTTTGAATGGAGCCCTGATATTATGTGTTTACAAGAGGTGGATAAGTATTATGAACTCTCAAATATTTTGGTTAAGGGAGGATATGCAGGATCTTATAAGAGACGAACTGGAGATACATCGGACGGCTGTGCAATGTTTTGGAAAGCTGATAAGTTCCGGTTATTAGATGGAGAGAGTATTCAATATAAGGACATCGGCCTTCGTGATAATGTTGCTCAACTTCTAGTATTTGAGATGCATGGATCTAACTCAAGAAGACTGTTGGTTGGTAACATCCATGTACTTTATAACCCAAACAGGGGAGAAGTTAAATTAGGTCAAATTCGTCTCCTCGCATCAAAAGCACAGATCATCTCAAAGAAATGGGGTAATGCCCCTGTAATCCTTGCCGGTGATTTTAATAGTACTCCTCAGAGTGGAATATACAAGTTCTTGTCATCGTCCGAGCTTAATATCAAACTATATGACAGAAAGGAGTTATCTGGACAGAAACGCTGTCGTCCTGCTCAGGTTTTAGACAGGGAAAAAGAAACAGTTGTTCAATTTATTTCACAGGATGGATTGTTAAACTGCTGGACAGATGAAGAGATAAAAACTGCAACCGGTGATCCTGAGTGTCACTTGGCTGTGCATCCATTAAAGCTGAATAGTTCGTATGCCACTGTCAATGGTTCACCTAGTACACGGGGATTCAATGGTGAACCCTTGGCAACTTCCTATCACGCAAAGTTTATTGGCACTGTAGATTATCTATGGTACTCTGACGGAATTGTACCTACAAGAGTTCTTGATACCGTGTCAATCCGTGACCTTCGAAGGGCTGGGGGCCTTCCATGCAAGAAAGTGGGAAGCGACCATTTGGCCTTGCTGTCCGAATTTTCCTTCAGTTGCCCAAAATAA 1251 0.4213 MASSTSSSCCLFPSFISSNAKRVPIQICFNFTVPKPSSQIHCQYHSNSNSSTNHSHGIERRLVEAFDQSRASSERFTVASYNILADRNASQHPDLYVNTPSRYIHWDRRKKILSQEFFEWSPDIMCLQEVDKYYELSNILVKGGYAGSYKRRTGDTSDGCAMFWKADKFRLLDGESIQYKDIGLRDNVAQLLVFEMHGSNSRRLLVGNIHVLYNPNRGEVKLGQIRLLASKAQIISKKWGNAPVILAGDFNSTPQSGIYKFLSSSELNIKLYDRKELSGQKRCRPAQVLDREKETVVQFISQDGLLNCWTDEEIKTATGDPECHLAVHPLKLNSSYATVNGSPSTRGFNGEPLATSYHAKFIGTVDYLWYSDGIVPTRVLDTVSIRDLRRAGGLPCKKVGSDHLALLSEFSFSCPK 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03938 416 SUPERFAMILY DNase I-like 70 413 IPR036691 -
Vifa6g03938 416 Gene3D Endonuclease/exonuclease/phosphatase 49 416 IPR036691 -
Vifa6g03938 416 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 41 412 - -
Vifa6g03938 416 Pfam Endonuclease/Exonuclease/phosphatase family 79 403 IPR005135 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03938 Vifa-Chr6 1302705654 1302709087 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03938 76 264 EF-hand Containing Proteins AT5G54130 27.805 4.94e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03938 - - gmx:100779393 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03938 6 1302705654 1302709087 Vifa6g03938 6 1302705654 1302709087 ECH