Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03729 ATGGCGATCTCATCACAATCTTTCTCACCTTCCTTCATCTTAACTCGCCACGATTCAACTCGCCCAACTCGTCTTCCCTCTCGACTCACCTTCACTCACTTCCGCAAAACCCAATCCCCTCATTTCATCGCTTCTTCGCGTCTGAACTCGTCTAAATCCTCCGACGCCGGCGGTTCCATCTCGCCGGATAACGGCGACGTCACCTACGAGCTTCACCACGATCTCTCGCCGCAGCGGCGGAGACGCGGATCGCCGGTTTTCGTGACGCTTCCGGTGAAATCGGTGGGGAGAGAGGGGAAGATATGGAGGCCGAAAGCGATGATGCTGTCGTTGAAGGCGTTGGCGGCGGCGGGTGTGGAAGGGGTTGTGGTGGAGATTTGGTGGGGAGTGGTTGAGAGGAATGAGCCTAGGGTTTATGATTGGAGAGGGTATCGGGAGCTTGTTATGATGGCTTGCATGTGTGGTCTCAAAGTTCGTGCTGTTCTTGCGTTTCATCAATATGGTTCAGATGGTGATGATCTTAATGGGATACCACTTCCTTTATGGGTGCTTGATGAGATACAAAAGGATCCGGATTTAACGTTTTCTGATAGATTTGGAAGAAGAAATACCGAATACATTTCTCTCGGTTGTGATATTCTTCCTGTGCTGCGTGGGCGTTCTCCCATTCAAGCATATGCAGATTTTATGAGGGACTTCAGGGACACTTTTAGGCCTTTTCTTGGCACTATCATTACAGGAGTGCAGATTGGCATGGGTCCTGGTGGTGAACTAAGATATCCTTCATTGTCTTTACAAAAGCTAAATTTGGCTTGGTCTCGCGAACTTGGAGAGTTTCAGTGTTATGATAAGTATATGCTTGCTTCTCTAAACGCCTCTGCAAGAAATATTGGAAAGCGTGAATGGGGAAATGGTGGTCCATCTGGTGCTGGAAGTTTGATCCAAAATCCTGAGCGTACTGAATTCTTTAGAAACGAGGGCGGCTCTTGGAACATGCCGTATGGTAAATTTTTCCTCGAATGGTACTCGGATATGCTACTACTGCACGGAGAGAGAATTTGTAGGGAAGCTGAAACTATATTTAGGGGCACAGAAGTCCACATATCAGCAAAATTGGCTGCCATTCACTGGCACTATGTCACACAATCCCATCCATCGGAGGTAACAGCAGGCTATTATAATACTTTTAACAGGGACGGATACTTACCAATTTTACGCATGTTTAGTAAATACGGATTCTCGATGTGCTGCTCTTGTTTTGAAATGCAAGATATAGTTATGAAGAAGATCAACCCAGACTGTAGCCCCGAAGGCTTTCTTAGACAACTTTTGCTGGATGCCAGGCTCTGTGACATATCACTTGAAGGCCAAAATTTTTCAACCAATTTGGATGATGATGGATTCACTCAGGTGCTAAAGATGTCTAAATATTACTCAGATGGTATCGAGAGACGCCCCTTCTCATTCAACTTTGTAAGAATGGATAAAAATATGTTTGAACCCCGAAATTGGGATCGGTTTGCTCGATTTGTGAGACGAATGTCTGATGGAAACATGTTTCGAGCCCGATTAAATTCTGTAGGAAACCTACGGTTGAAAACTACAGTGGCTGCACAAGTTGGATTGTTATACCAGCTTTACCAGTACTCTTGA 1653 0.4574 MAISSQSFSPSFILTRHDSTRPTRLPSRLTFTHFRKTQSPHFIASSRLNSSKSSDAGGSISPDNGDVTYELHHDLSPQRRRRGSPVFVTLPVKSVGREGKIWRPKAMMLSLKALAAAGVEGVVVEIWWGVVERNEPRVYDWRGYRELVMMACMCGLKVRAVLAFHQYGSDGDDLNGIPLPLWVLDEIQKDPDLTFSDRFGRRNTEYISLGCDILPVLRGRSPIQAYADFMRDFRDTFRPFLGTIITGVQIGMGPGGELRYPSLSLQKLNLAWSRELGEFQCYDKYMLASLNASARNIGKREWGNGGPSGAGSLIQNPERTEFFRNEGGSWNMPYGKFFLEWYSDMLLLHGERICREAETIFRGTEVHISAKLAAIHWHYVTQSHPSEVTAGYYNTFNRDGYLPILRMFSKYGFSMCCSCFEMQDIVMKKINPDCSPEGFLRQLLLDARLCDISLEGQNFSTNLDDDGFTQVLKMSKYYSDGIERRPFSFNFVRMDKNMFEPRNWDRFARFVRRMSDGNMFRARLNSVGNLRLKTTVAAQVGLLYQLYQYS 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03729 550 MobiDBLite consensus disorder prediction 45 61 - -
Vifa6g03729 550 Gene3D Glycosidases 76 540 - -
Vifa6g03729 550 MobiDBLite consensus disorder prediction 45 80 - -
Vifa6g03729 550 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 47 521 IPR001554 GO:0000272|GO:0016161
Vifa6g03729 550 SUPERFAMILY (Trans)glycosidases 83 538 IPR017853 -
Vifa6g03729 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 330 349 IPR001554 GO:0000272|GO:0016161
Vifa6g03729 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 139 157 IPR001554 GO:0000272|GO:0016161
Vifa6g03729 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 401 424 IPR001554 GO:0000272|GO:0016161
Vifa6g03729 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 383 394 IPR001554 GO:0000272|GO:0016161
Vifa6g03729 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 366 382 IPR001554 GO:0000272|GO:0016161
Vifa6g03729 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 161 182 IPR001554 GO:0000272|GO:0016161
Vifa6g03729 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 118 132 IPR001554 GO:0000272|GO:0016161
Vifa6g03729 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 253 275 IPR001554 GO:0000272|GO:0016161
Vifa6g03729 550 Pfam Glycosyl hydrolase family 14 87 510 IPR001554 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03729 Vifa-Chr6 1225255586 1225259127 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03729 9 521 Glycoside Hydrolase AT4G17090 45.000 2.33e-152 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03729 K01177 - gmx:100805981 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03729 6 1225255586 1225259127 Vifa6g03729 6 1225255586 1225259127 ECH