Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa6g03728 | ATGCCAGGTCTCGTTTCCCCCGGCGGACCTCCGCCCCGAATCACCTTACCCGAAACCCCCCAAAGATCCGACTCCACCACCAAAACACCCTCCCCCTCACCTCTCCCCAAAAAACCACCCTCCCCCTCTCCCTCCTCCCGTTCCAAAAAGAAAACACCTGAAACTCCAACCACCACTCTCCTCTCCGAAGCCTCACTCGATAACCCAGATCTCGGCCCATTCCTACTCAAACTCGCCCGCGACACCATCGCCTCCGGCGATGGACCTTCCAAAGCCCTCGACTACGCCATCCGCGCCTCCAAATCCTTCGAACGCTGCGCCGTCGATAACATCCCCAGTCTCGACTTCGCCATGAGCCTCCACGTCCTAGCCGCGATTTACTGTAGCTTAAGCCGCTTCGAAGAAGCCGTACCCGTCCTCGAACAAGCGATCCTTGTTCCCGATATCAAAATAGGCGCCGATCACGCTCTCGCCGCTTTCTCCGGTTATATGCAGTTAGGTGATACTTTCTCTATGCTAGGTCAAGTTGATAAATCGATTTCTTGTTATGATCAAGGTCTTCAGATTCAGATGCAAACCCTAGGTGAAACCGATCCGCGCGTGGGGGAAACGTGTCGGTACTTGGCGGAGGCGAATGTTCAGGCGATGCAGTTCGATAAAGCGGAGGAGCTTTGTAATAAAACTTTAGAGATCCATCGTGCGCATAGTGAGCCTGCTTCGCTCGAGGAGGCTGCAGATCGGAGGCTTATGGCGTTGATTTGTGAGGCGAAGGGAGATTACGAGCCCGCGTTGGAGCATCTTGTTTTGGCCAGCATGGCCATGATTGCGAATGGACAAGATACTGAAGTCGCTTCCATTGATGTGAGCATTGGGAATATTTATATGGCGCTGTGTCGATTTGATGAAGCCATATTTTCTTATCAGAAAGCGCTTACTGTGTTTAAATCAGCGAAAGGAGAGAATCACCCGTCGGTTGCGTCTGTGTTTGTTCGGTTGGCTGATTTGTATCATAGGACGGGGAAGCTTCGTGAGTCGAAGTCTTATTGTGAAAATGCGCTTAGGATATACTCGAAACCAGTTCCTGGGACGACCGCGGAGGAGATTGCTGGTGGTTTGACGGAGGTTTCGGCTATATTTGAATCTGTTGATGATCCGGAGGAGGCGTTGAAGCTGTTGCAGAAGGCGATGAAATTGTTGGAGGATAAACCTGGACAGCAGAGCACGATTGCGGGTATAGAAGCGCGGATGGGAGTGATGTATTACATGATTGGGAAGTATGATGAAGCTAGAAGCGTGTTTGAGAGTGCTGTGTTGAAATTGAGAACCAGTGGGGAAAGGAAATCTGCATTTTTTGGGGTTGTTTTGAACCAAATGGGGTTGGCTTGCGTGCAATTGTTTAAGATTGATGAAGCTGCTGAGTTGTTTGAGGAAGCTAGAGGAATTCTTGAACAAGAGTGTGGACATTGTCATCAAGATACTCTTGGAGTTTATAGCAATCTTGCAGCAACTTATGATGCAATGGGAAGGGTTGGAGATGCAATTGAAATCTTAGAATATGTTTTAAAGTTGAGGGAAGAGAAGCTTGGAATAGCAAATCCTGATTTTGAAGATGAGAAGCGGCGTTTGGCTGAGTTGCTGAAAGAAGCTGGTAAGACACGAGACAGAAAAGCAAAATCTTTGGAAAACCTGATTGATCCAAATTCAAAGAGGACAAAGAAGGAGAGTACCAAGAGGTGGCCTGGTTTGGGATTTAGAATTTAA | 1761 | 0.4867 | MPGLVSPGGPPPRITLPETPQRSDSTTKTPSPSPLPKKPPSPSPSSRSKKKTPETPTTTLLSEASLDNPDLGPFLLKLARDTIASGDGPSKALDYAIRASKSFERCAVDNIPSLDFAMSLHVLAAIYCSLSRFEEAVPVLEQAILVPDIKIGADHALAAFSGYMQLGDTFSMLGQVDKSISCYDQGLQIQMQTLGETDPRVGETCRYLAEANVQAMQFDKAEELCNKTLEIHRAHSEPASLEEAADRRLMALICEAKGDYEPALEHLVLASMAMIANGQDTEVASIDVSIGNIYMALCRFDEAIFSYQKALTVFKSAKGENHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYSKPVPGTTAEEIAGGLTEVSAIFESVDDPEEALKLLQKAMKLLEDKPGQQSTIAGIEARMGVMYYMIGKYDEARSVFESAVLKLRTSGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARGILEQECGHCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRRLAELLKEAGKTRDRKAKSLENLIDPNSKRTKKESTKRWPGLGFRI | 586 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa6g03728 | 586 | PANTHER | PROTEIN KINESIN LIGHT CHAIN-RELATED 3 | 24 | 569 | - | - | |
| Vifa6g03728 | 586 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Vifa6g03728 | 586 | FunFam | Protein KINESIN LIGHT CHAIN-RELATED 2 | 446 | 563 | - | - | |
| Vifa6g03728 | 586 | Gene3D | Tetratricopeptide repeat domain | 270 | 452 | IPR011990 | GO:0005515 | |
| Vifa6g03728 | 586 | Gene3D | Tetratricopeptide repeat domain | 453 | 578 | IPR011990 | GO:0005515 | |
| Vifa6g03728 | 586 | SUPERFAMILY | TPR-like | 411 | 552 | IPR011990 | GO:0005515 | |
| Vifa6g03728 | 586 | MobiDBLite | consensus disorder prediction | 1 | 66 | - | - | |
| Vifa6g03728 | 586 | SMART | tpr_5 | 202 | 235 | IPR019734 | GO:0005515 | |
| Vifa6g03728 | 586 | SMART | tpr_5 | 494 | 527 | IPR019734 | GO:0005515 | |
| Vifa6g03728 | 586 | SMART | tpr_5 | 369 | 402 | IPR019734 | GO:0005515 | |
| Vifa6g03728 | 586 | SMART | tpr_5 | 160 | 193 | IPR019734 | GO:0005515 | |
| Vifa6g03728 | 586 | SMART | tpr_5 | 452 | 485 | IPR019734 | GO:0005515 | |
| Vifa6g03728 | 586 | SMART | tpr_5 | 410 | 443 | IPR019734 | GO:0005515 | |
| Vifa6g03728 | 586 | SMART | tpr_5 | 117 | 150 | IPR019734 | GO:0005515 | |
| Vifa6g03728 | 586 | SMART | tpr_5 | 284 | 317 | IPR019734 | GO:0005515 | |
| Vifa6g03728 | 586 | SMART | tpr_5 | 326 | 359 | IPR019734 | GO:0005515 | |
| Vifa6g03728 | 586 | ProSiteProfiles | TPR repeat profile. | 284 | 317 | IPR019734 | GO:0005515 | |
| Vifa6g03728 | 586 | Gene3D | Tetratricopeptide repeat domain | 110 | 269 | IPR011990 | GO:0005515 | |
| Vifa6g03728 | 586 | Pfam | MalT-like TPR region | 109 | 271 | IPR041617 | - | |
| Vifa6g03728 | 586 | Pfam | Tetratricopeptide repeat | 283 | 357 | - | - | |
| Vifa6g03728 | 586 | Pfam | Tetratricopeptide repeat | 454 | 526 | - | - | |
| Vifa6g03728 | 586 | MobiDBLite | consensus disorder prediction | 551 | 580 | - | - | |
| Vifa6g03728 | 586 | MobiDBLite | consensus disorder prediction | 45 | 65 | - | - | |
| Vifa6g03728 | 586 | SUPERFAMILY | TPR-like | 163 | 437 | IPR011990 | GO:0005515 | |
| Vifa6g03728 | 586 | MobiDBLite | consensus disorder prediction | 551 | 586 | - | - | |
| Vifa6g03728 | 586 | Coils | Coil | 535 | 555 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa6g03728 | Vifa-Chr6 | 1224979661 | 1224981989 | Dispersed/Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa6g03728 | - | - | gmx:100815100 | 960.288 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vifa6g03728 | 6 | 1224979661 | 1224981989 | Vifa6g03728 | 6 | 1224979661 | 1224981989 | ECH |