Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03693 ATGATTCTAAACCTTTCTACTCCTTCACTTCCTCTCTCTTCTTTCAAACTCTATCAAACTTGTTCCAATCGCATTTTCACCACTTCCACGCTTCACAAACCATCCAAATTCCCCAACCTCAAAGCTTCCGTTAGCCAAAACGAAACCTCCAACTCCAACAACCTATTGGATCAACAGCTTCTTCATCGAATCGCAGCCACCGCCAAAGACGCCGACGATGCATTGCACTTAATCTCCGATTACTGTTCCACTAACTCCGGCGTCGTCTCTACCTCGGATTGTTGCTCTATTATTTCCGCCTCCCTTGATAGGAATAATCATCAACTTGCTTTGTCCGTTTTCTACTCCATGCGCTCCACTTTTCATCAAGTTGATGAGAATGGTCCTTTAGTTGAGAGATGGAAGTGGTCGAGGCCAAATGCACGTGTTTATACAATGTTGATTCAGGGTTTGGCTGCATCTTTGAGGGTTTCAGATGCTCTTAGTGTGGTTAAGTATATATGTGAGGTGGGCGTGTCTCCTTCTGAAGAGGTCCCCTTTGGAAAGATAGTGAGGTGTCCTAGTTGTCGGATAGCTGTTGCAGTTGCACAGCCACAGCAAGGTATTCAGATAGTATCTTGTGCAAAGTGTCGCTACCAATACGAACTTGTTTCAGGAAACATAGTCAGTATTCAATCAGAAGAAATCGGCATGGACATTACAGCATGGGAAAAGGGGTTAAGATTCCTGAAACTGATGAAGCAGAGCATTCCTTCTGCTGTTCATTCTATTGTGGTGGAGACCCCTTCAGGTATGGCTCGTACCCACAGGTTTGCAACTGAGACAGTTGATCTACCGGCACAAGAAGGCGAAAGGGTTACTGTTGCTGTGGCAGCTCCATCAAATGTATATAGAAATCTAGGCCCGTTTAAATTAAGGTCAAGGGCACCGAATTTCTACCCTGGTGAGGCTATGTGCATAACAAACCACAAAGATGGACGGGAATCACGTCTTATACGAGCCCCTAGAAAAGATGAAAATTCATCATTACTTAAACCCTCCATCCTCTTTCCACTTCTTGCTTTGTTCGCCACCGGAGATGCTGCCTCTGGATTTATTGACCCCAGTCTGCCTCAATTCCTATCAGTTGTTGCAGTTTCATCTCTTGCTGTCGGCTCTGCTTTGAATTCCTTTGTTATCCCCCAGCTTAATCAGCTTCCGCAAAGATCAGTGGAAGTAGTTGCTATCAAACAACGTCTTTTATCTCAATATGACGTGATTCAGTCTCGCATCAATGGCCTAAAAGAAGCTGCTGAAAAAGAGGTTTGGATGTTAGCCCGGATGTGCCAACTTGAAAATAAAATTTCTGCTGTTGGAGAACCTTCATATCGGACTCGAATAAGTAAAGTCAAAAGGATCCGAGAGAGCTTGCAGAACTCCCTCTGGGGACGAATTGAATTGATTGCTAGCTTTGCTAAGATTTCCTCAATGATTGAAATTGAAGTGGAGATGGAAACTGATGTTCTTGCTGCTGAAACTTCTAGTGATGTGGATGGTTTCACAGAACAGATAGAGCAAATCATGGAGCTAGAAAATTTAGAAGAGAGATGGAAAATGCAAGCAGAAGCAAATGACGAGGCCGAAAGACTTCTTAGCTCCCAGCCCCTGCCCTTGGATGAAGTTTAA 1665 0.4408 MILNLSTPSLPLSSFKLYQTCSNRIFTTSTLHKPSKFPNLKASVSQNETSNSNNLLDQQLLHRIAATAKDADDALHLISDYCSTNSGVVSTSDCCSIISASLDRNNHQLALSVFYSMRSTFHQVDENGPLVERWKWSRPNARVYTMLIQGLAASLRVSDALSVVKYICEVGVSPSEEVPFGKIVRCPSCRIAVAVAQPQQGIQIVSCAKCRYQYELVSGNIVSIQSEEIGMDITAWEKGLRFLKLMKQSIPSAVHSIVVETPSGMARTHRFATETVDLPAQEGERVTVAVAAPSNVYRNLGPFKLRSRAPNFYPGEAMCITNHKDGRESRLIRAPRKDENSSLLKPSILFPLLALFATGDAASGFIDPSLPQFLSVVAVSSLAVGSALNSFVIPQLNQLPQRSVEVVAIKQRLLSQYDVIQSRINGLKEAAEKEVWMLARMCQLENKISAVGEPSYRTRISKVKRIRESLQNSLWGRIELIASFAKISSMIEIEVEMETDVLAAETSSDVDGFTEQIEQIMELENLEERWKMQAEANDEAERLLSSQPLPLDEV 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03693 554 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 29 552 - -
Vifa6g03693 554 Coils Coil 523 543 - -
Vifa6g03693 554 Gene3D Tetratricopeptide repeat domain 56 255 IPR011990 GO:0005515
Vifa6g03693 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 140 174 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03693 Vifa-Chr6 1212378150 1212383501 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03693 - - gmx:100781803 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03693 6 1212378150 1212383501 Vifa6g03693 6 1212378150 1212383501 ECH