Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03673 ATGGAAAAGTTACCGCAAGTCATTTTCATGCTTGGTCTGTTTCTATTTCCCTTTGCTTTTGCTGGGCATGACTACGGTCAAGCTCTGAGTAAGAGCATTATGTTCTTTGAAGCTCAGAGATCTGGTTACCTTCCTCACAACCAGAGAGTTTCATGGAGATCTCATTCCGGTCTTCAAGACGGTAAAGCGAGTGGCGTAGATCTAGTCGGGGGCTACTACGACGCCGGTGATAATGTAAAATTTGGTTTACCTATGGCGTTTACCGTTACAATGATGTCGTGGAGTATCATTGAGTATGGTAAACAAATGGCGAGTAGCGGTGAGCTTGGTCATGCTATGGAGGCCGTGAAGTGGGGGACTGATTATTTCATGAAGGCTCATCCTGAACCTAATGTTCTGTATGGAGAGGTGGGAGACGGAAACACTGACCACAAGTGTTGGCAAAGACCGGAGGATATGACTACTGACCGTCACGCTTACAAGATTGATCCGAGTAATCCCGGGTCGGATCTCGCCGGAGAAACCGCCGCCGCTATGGCAGCAGCTTCCATAGTCTTCCGCCGTTCTAACCCTGCTTATTCTCATGAACTACTCAGTCATGCCTACCAGTTGTTTGATTTTGCGGATAAATATAGAGGCAAATATGACAGCAGCATCACAGTTGCACAGAAGTACTATAGATCTATCAGTGGCTACAATGATGAATTGCTCTGGGCTGCGGCGTGGTTGTATCAAGCATCTAACAACCAATATTACTTGGATTACCTTGGTAGAAATGGTGACGCCATGGGTGGAACTGGTTGGCAAATGACTGAATTTAGTTGGGATGTTAAGTATCCTGGTGTTCAGACTTTGGTTGCCAAGTTCCTGTTGCAAGGAAAAGCTGGCATTCATGCACCGGTTTTTGAAAGATATCTGGAAAAGTCTGAGTATTTCATGTGTTCATGCATGGGAAGGGGTACTCACAATGTTCAGAGGACACCCGGTGGCCTAATTTACCGCCAGAGATGGAACAACTTGCAGTTCGCCACAAGTTCCTCCTTTTTAGCAACAGTCTATTCTGACTACCTCGCTTCTTCTGCCAGGGACTTGAAATGTGCTTCTGGCTATGTCGCTCCGTCTCAACTTCTCTCATTTGCAAAGTCTCAGGTGGATTACATTCTTGGGGACAACCCGAGGGCTACGAGTTACATGGTGGGATACGGAAACAATTTCCCTCAAAGAGTTCACCACAGAGGTTCATCCATTGTTTCAATCAAGGCCAACCCTTCATTTGTCAGCTGTATGGGAGGTTATGATACTTGGTTTAGCAGCAAAAGGAGCAACACCAATATACTAACTGGTGCTATTGTTGGTGGACCTGATGCATATGATGACTTTGCTGATGAAAGGAAGAACTATGAACAAACGGAACCAGCAACCTACAACAATGCTCCTCTTATAGGTGTTCTTGCTCGGCTCGGTGGTGGTCATGGTGGTTATAACCAGCTCCTTCCAGTTGTTGTTACAGCTCCTAACCCTGTTGTTACCAGGCAACATTCATTCACCAAACCCAAGATAACCCCATCCCCGGCTTCATGGTCCGGTCCAATTTCCGTCGAACAGAAAATGACTCACTCATGGGTTGCAAATGGAATAACTTACTATAGATATTCAACAACTGTTACTAACAAATCAAACAAGATTCTCAAGTCTCTCAATCTTTCAATATCCAAGCTTTACGGTCCAATCTGGGGACTAACAAAGTCTGATGTCTCAGTCGCGAACTACTTGTTGGTCTGA 1782 0.4545 MEKLPQVIFMLGLFLFPFAFAGHDYGQALSKSIMFFEAQRSGYLPHNQRVSWRSHSGLQDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSIIEYGKQMASSGELGHAMEAVKWGTDYFMKAHPEPNVLYGEVGDGNTDHKCWQRPEDMTTDRHAYKIDPSNPGSDLAGETAAAMAAASIVFRRSNPAYSHELLSHAYQLFDFADKYRGKYDSSITVAQKYYRSISGYNDELLWAAAWLYQASNNQYYLDYLGRNGDAMGGTGWQMTEFSWDVKYPGVQTLVAKFLLQGKAGIHAPVFERYLEKSEYFMCSCMGRGTHNVQRTPGGLIYRQRWNNLQFATSSSFLATVYSDYLASSARDLKCASGYVAPSQLLSFAKSQVDYILGDNPRATSYMVGYGNNFPQRVHHRGSSIVSIKANPSFVSCMGGYDTWFSSKRSNTNILTGAIVGGPDAYDDFADERKNYEQTEPATYNNAPLIGVLARLGGGHGGYNQLLPVVVTAPNPVVTRQHSFTKPKITPSPASWSGPISVEQKMTHSWVANGITYYRYSTTVTNKSNKILKSLNLSISKLYGPIWGLTKSDVSVANYLLV 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03673 593 FunFam Endoglucanase 21 491 - -
Vifa6g03673 593 Pfam Carbohydrate binding domain CBM49 531 583 IPR019028 GO:0030246
Vifa6g03673 593 SUPERFAMILY Six-hairpin glycosidases 22 500 IPR008928 GO:0005975
Vifa6g03673 593 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 460 478 IPR033126 -
Vifa6g03673 593 SMART CBM49_2 531 593 IPR019028 GO:0030246
Vifa6g03673 593 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 386 412 IPR018221 -
Vifa6g03673 593 Gene3D - 22 489 IPR012341 GO:0005975
Vifa6g03673 593 PANTHER ENDO-1,4-BETA-GLUCANASE 23 488 - -
Vifa6g03673 593 Pfam Glycosyl hydrolase family 9 25 484 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03673 Vifa-Chr6 1207712359 1207716182 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03673 1 583 Glycoside Hydrolase AT1G64390 77.740 0.0 944
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03673 K01179 - gmx:732598 1018.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03673 6 1207712359 1207716182 Vifa6g03673 6 1207712359 1207716182 ECH