Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03608 ATGAAGTGCAGATCCGTTGCGTGCATATGGTCCGGCACACCCTTCCCCTCCGCTCACAAACTAACCGCCGTCGCCGCTTTCACCCAACCCCCATCGCCCGCCTTCTACACCGCCGGATCCGATGGCTCCATCATCTGGTGGTCCCTTTCCAATTCCAATTCCACTTCCACTTCCGCTCCGGAAGTTAAATCGGTTGGAGTGTTGTGCGGTCATGCATCACCGGTTACTGATCTCGCTCTTTGTAGTCCGATATCAGGTGAAGAAAACGATATCGTTTCAGGTAGAACTAATTTCAGTGCTTTGATAAGTGCTTGTTGTGATGGTTTCTTGTGTGTATGGAGTAAAAGCAGTGGACATTGCCGTTGTAGAAGGAAACTGCCACCGTGGGTTGGTACTCCTCTTGTAATTCGAACGCTTCCTTCGACGCCGAGATATGTATGTATAGCTTGTTCTTTTGTGGATTGTTATTCTGTTAATGATGAGTTAGGAGATAGAGAGAGTCACCACAGGAAGAATTATAAGTCTACTATCCTTATTGTGGATACGTATTTGCTTTCGATTACTCAAACAGTTTTTCATGGATATTTATCCATTGGTCGTATCAAGTTTATGTCACTAGTTTTGTCGGATGATGATGAAAAAAGGAATTTAGTGTTTGTGGCGGATTCTTATGGGAAACAACAGATGGTTACGATATTGGAAGATTCTCGTGATTGTGTGGAAAGCTTGGTGACTCCACGTAGTGATAAGTGTGCATCGGAACCTTCTTTTCCTGCCGAGGGTTTCTGTGGTGTGGATCAAGTTATTTCAGTTTTAGCTTTTGAGAATACTGTTGCTTTTATATTGAAAGATAGGTGTATTTTTAGGTTATTGTCTAGTGATACCGTGATTGGAGAAGTTTCTTTTGCTGACAACCTCTTTTTTGCTGATGGGCATTCCACTCAAGCACATGCTGTTGGCGGCGTTGTTCTTGAAAGTGATGATGTGGGGAGTACACCTGATGCCTATGAAGGAGATTTGATTCCAGTACATTTTGTTGTGTGGAATAATAGAGGTTATGCAATTATCTATGAAATATCGTATCAGAATGATGTTTTTCATTGTGAACCCTATTCTGAGATTCCTGCGGGTCATTATCAACCTGAGATAAGATTGTCTATTTTTTTCCTACAAGTAAATCAAAATCTTGTATGTATCAAGTCCGTTTGCTTTCATCATGAGGAACCTTTACTATGGAGACCACATATCACAGTTTGGTCGTTGCATCAATTTGATGATAAACCTGGAAAATTATGCCGTCAATGCAAAATGATTACGGATGGCGTATCTTCCACCAACTGGTTCGAGATGTCTACTCAGCCCAACGTAAATGGTGAGCTAGATATTAAATCAACCTTTGGTGGTTCAAGTCCAGGTTCTGAGGACATATATGACTTACATGAAAATAGCCTAAGTAATTATTATCCTTACAAGGGGAAGATTGTTTCTTCTTCTATGATTATTGCTGAGAACCTTTATACACCTTATGCTGTGGTATATGGATTTTTTAGTGGAGACATAGAGGTTGTAAGATTTGATCAGTTTCCAGGGATTTTTCTGGATGATGCAAGTTCCAATCCTGATGAAAAGCCAACTTCTTGCAAACAGAATTTCATAGGACATACAGGCGCTGTACTTTGTTTGGCAGCACATCAAATGACGTGTAGTTCAAAATGCTGCACCTTTAATCGAGTTTTGATTTCTGGCAGTATGGATTGTACAATTCGTATATGGGATCTTGACACTGGCAGTCTTATTAAGGTAATGCATCATCATGTGGCCGCAGTGCGTCAAATTATTCTTCCCCCTTCTTTAACAGGACATCCTTGGAGTGACTGCTTTTTTTCAGTTGGAGAGGATGCATGTGTTGCCCTTGTTTCTCTTGATACTCTGCAGGTGGAAAGAATGCTTCCTGGACATATGAACTATCCTTCAAAAGTTTTATGGGATGGGGCAAGAGGTTATATTGCCTGTCTCTGTCAAACACATTATGGAACTTCTGATGGTGATGTATTATACATTTGGGATGTAAAGACAGGCTCCCGTGAGCGACTCATACGTGGGACAGCTGCACATTCTATGTTTGATCATTTTTGTAAAAGTATCTGTATGAATTCTATATCTGGCTCAGTGTTGAATGGAAATACATCAGTCTCTTCACTACTTCTTCCAATAGTTGATGATGCAAAGTTCTCTAACTCTCCCTTAAGTCATACAGGGAACTTGCTTCCTTCATCGAAGTCATCGCCAAGTATTTCAAGTACAGCCGAGCTGAATTCTTTCAAACCAAAGGCAGGTAAAGGAAATTCAGCAAAGCCAAATTCATCTTCTTTGTTTGGTCCTTTGAGTAACAACCTTCCTATCAAATGCTCTTGTCCATTCCCTGGAATTGTGTCTATGAGTTTTGATCTTGCTTCATTGATGTTCTCTTTTCAAAAGAGTGACTCCATGGAGAATGGTGACGGTAAGCTTGTGAATATCAACTTGAAGCATAAGGGCGTTCAAGAGCAAAATCCAGCCTTCCGTAATCCTGAAACTTCAGAGGGGCACGATTGGGTTGGCTTTGACGAATACTTACTGCGATACAGTTTGTCATTTTTACATTTGTGGAACGTAAACAGTGAGCTTGATAATTTGCTGATAAGTGATATGAAACTGAGGAGACCAGGAAATTTTATAGTAGCTTCGGGTCTGCAGGGAGATAAAGGGTCATTAACATTGTCATTTCCTGGTCAGAGTGCTACTCTTGAGCTGTGGAAATCATCATCCGAGTTTTCTGCAATGAGATCATTGACTATGGTATCCCTTGCCCAACGTTTGATTAGCTTGTCTCACTCAAGTTCAGCAGCCAGCAGTGCATTAGCGGCATTCTATACTCGGAATTTCTTGGAAAATTTCCGAGATCTGAAGCCACCTTCATTACAGCTCTTGGTTGCTTTTTGGCAAGATGAAAGTGAACATGTACGTATGGCTGCCCGTTCTATATTTCACTGTGCTGCCTCTCATGCTATTCCTCTACCTCTATGCAATTCAAAACCTAATGAGTCAAATAATACAATCTCCCAATCTGGAGGTAGAGACGTACATCTGGGAGGCGTGGTAGTAGAAAGTATATCTCCTAAGGCCAAAAAACAAGAAATTTCCCAGGATGAAGAATCTAAGATACTTACTTGGCTAGAGTCATACGAAGTGCTAGATTGGATTTCTTGTGTTGGTGGAACAAGTCAAGATGCAATGACATCTCACATTATTGTTGCTGCTTCACTGGCTATTTGGTATCCCAGCCTTGTAAAACCTAAACTTTCAATGTTAGTTGTTCATCCATTACTGAAGTTGGCTATGGCCATGAATGAGAAATACAGCTCCACTGCTGCTGAACTTCTTGCAGAGGGCATGGAGAGCACATGGAAAGAATGCATGGTCTCTGAGATTCCTCGTCTAATTGGGGATATCTTTTTCCAAGTAGAGTTGAGTGGCCCATCTTCTAAGTCAGTGACTGAAATTCCAGCCGCATCTTTTTCTATTAAACAGACTTTGGTTGAGGTTCTCCTTCCAAGTTTAGCTATGGCTGATATACCAGGTTTTCTGACAGTGATCGAAAGCCAAATTTGGTCAACTGCATCTGATTCACCCGTCCACATGGTTTCTTTGTTGACTCTCATAAGGATTATGCGTGGTTCTCCAAGATATTTGGCTCAGTACCTTGACAAGGTTGTCAACTTCATTTTACAGACTATTGATCCTAGCAACTCAGTTATGCGGAAGGCATGCTTCCAGAGTTCAATGACAACTTTCAAAGAAGTTGTGCGTGTATATCCGATGGTTGCTGTCAATGAGTCTTGGACCAAACTAGCAGTTGGAGAAGTGATTGGGGAAGTTAACAATGCAAGCATTAGGGTCTATGATATGCAAAGTGTGACAATGGTAAAGGTTTTGGATGCAAGTGGGCCTCCGGGACTTCCAAGTTTGCTCACAGCTGCGGCTTCCGGAACCTTGTTAACTACTGCGATCTCAGCGCTAAGCTTTTCACCAGATGGAGAGGGGCTGGTTGCTTTTTCGGAACACGGGCTCATGATTAGATGGTGGTCACTGGGATCTTTTTGGTGGGAGAAACTGAGCCGAAACTTTGTTCCTGTCCAGTGCACAAAACTAATATTTGTTCCTCCTTGGGAGGGATTTTCACCTAACTCGTCGCGATCAAGCATTATGGCTAGCATTTTGGATACTGAAAAGCAGCAGAATTTACAGGATAATACGAAGGATTCAAATCATGGGGACAGCTTGAAACAATTACTTCATAATCTAGACCTCTCTTACCGGTTAGAATGGGTTGCTGAACGGAAAGTACTCCTGACACGGCATGGTAATGAATTGGGCACTTTTCAGCTGTAG 4431 0.4177 MKCRSVACIWSGTPFPSAHKLTAVAAFTQPPSPAFYTAGSDGSIIWWSLSNSNSTSTSAPEVKSVGVLCGHASPVTDLALCSPISGEENDIVSGRTNFSALISACCDGFLCVWSKSSGHCRCRRKLPPWVGTPLVIRTLPSTPRYVCIACSFVDCYSVNDELGDRESHHRKNYKSTILIVDTYLLSITQTVFHGYLSIGRIKFMSLVLSDDDEKRNLVFVADSYGKQQMVTILEDSRDCVESLVTPRSDKCASEPSFPAEGFCGVDQVISVLAFENTVAFILKDRCIFRLLSSDTVIGEVSFADNLFFADGHSTQAHAVGGVVLESDDVGSTPDAYEGDLIPVHFVVWNNRGYAIIYEISYQNDVFHCEPYSEIPAGHYQPEIRLSIFFLQVNQNLVCIKSVCFHHEEPLLWRPHITVWSLHQFDDKPGKLCRQCKMITDGVSSTNWFEMSTQPNVNGELDIKSTFGGSSPGSEDIYDLHENSLSNYYPYKGKIVSSSMIIAENLYTPYAVVYGFFSGDIEVVRFDQFPGIFLDDASSNPDEKPTSCKQNFIGHTGAVLCLAAHQMTCSSKCCTFNRVLISGSMDCTIRIWDLDTGSLIKVMHHHVAAVRQIILPPSLTGHPWSDCFFSVGEDACVALVSLDTLQVERMLPGHMNYPSKVLWDGARGYIACLCQTHYGTSDGDVLYIWDVKTGSRERLIRGTAAHSMFDHFCKSICMNSISGSVLNGNTSVSSLLLPIVDDAKFSNSPLSHTGNLLPSSKSSPSISSTAELNSFKPKAGKGNSAKPNSSSLFGPLSNNLPIKCSCPFPGIVSMSFDLASLMFSFQKSDSMENGDGKLVNINLKHKGVQEQNPAFRNPETSEGHDWVGFDEYLLRYSLSFLHLWNVNSELDNLLISDMKLRRPGNFIVASGLQGDKGSLTLSFPGQSATLELWKSSSEFSAMRSLTMVSLAQRLISLSHSSSAASSALAAFYTRNFLENFRDLKPPSLQLLVAFWQDESEHVRMAARSIFHCAASHAIPLPLCNSKPNESNNTISQSGGRDVHLGGVVVESISPKAKKQEISQDEESKILTWLESYEVLDWISCVGGTSQDAMTSHIIVAASLAIWYPSLVKPKLSMLVVHPLLKLAMAMNEKYSSTAAELLAEGMESTWKECMVSEIPRLIGDIFFQVELSGPSSKSVTEIPAASFSIKQTLVEVLLPSLAMADIPGFLTVIESQIWSTASDSPVHMVSLLTLIRIMRGSPRYLAQYLDKVVNFILQTIDPSNSVMRKACFQSSMTTFKEVVRVYPMVAVNESWTKLAVGEVIGEVNNASIRVYDMQSVTMVKVLDASGPPGLPSLLTAAASGTLLTTAISALSFSPDGEGLVAFSEHGLMIRWWSLGSFWWEKLSRNFVPVQCTKLIFVPPWEGFSPNSSRSSIMASILDTEKQQNLQDNTKDSNHGDSLKQLLHNLDLSYRLEWVAERKVLLTRHGNELGTFQL 1476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03608 1476 ProSiteProfiles Trp-Asp (WD) repeats profile. 576 601 IPR001680 GO:0005515
Vifa6g03608 1476 Gene3D - 523 772 IPR015943 GO:0005515
Vifa6g03608 1476 Gene3D - 7 151 IPR015943 GO:0005515
Vifa6g03608 1476 PANTHER RABCONNECTIN-3B, ISOFORM A 3 1476 - -
Vifa6g03608 1476 MobiDBLite consensus disorder prediction 755 787 - -
Vifa6g03608 1476 SUPERFAMILY WD40 repeat-like 19 706 IPR036322 GO:0005515
Vifa6g03608 1476 SMART WD40_4 643 689 IPR001680 GO:0005515
Vifa6g03608 1476 SMART WD40_4 544 592 IPR001680 GO:0005515
Vifa6g03608 1476 SMART WD40_4 1342 1376 IPR001680 GO:0005515
Vifa6g03608 1476 SMART WD40_4 61 114 IPR001680 GO:0005515
Vifa6g03608 1476 SMART WD40_4 5 48 IPR001680 GO:0005515
Vifa6g03608 1476 SMART WD40_4 595 640 IPR001680 GO:0005515
Vifa6g03608 1476 ProSitePatterns Trp-Asp (WD) repeats signature. 579 593 IPR019775 -
Vifa6g03608 1476 SUPERFAMILY NHL repeat 1308 1379 - -
Vifa6g03608 1476 MobiDBLite consensus disorder prediction 755 773 - -
Vifa6g03608 1476 Pfam WD domain, G-beta repeat 546 592 IPR001680 GO:0005515
Vifa6g03608 1476 SUPERFAMILY ARM repeat 961 1272 IPR016024 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03608 K24738 - gmx:100818675 2222.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03608 6 1185928776 1185943560 Vifa6g03608 6 1185928776 1185943560 ECH