Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03596 ATGGCAGCTATCGCTAACTCCTTATCACTTAAACACACTCTCGCAACTCGCTTTCCACAAACAACAACGCGAACGCGTCTTTCTTCCACTTCCAGAACCTTCCATAGATGCTACGCTTCTTACGCAAACGAAAATCGCGAGTATGTGATTATTGGCGGTGGAAACGCGGCCGGATACGCCGCTCGTACTTTCGTCGAGCACGGTGTCGCCGATGGCCGTCTTTGTATCGTCACTAAAGAGGCGGTTGCGCCTTACGAGCGTCCTGCTTTGACGAAAGCTTACTTGTTTCCTCCGGATAAGAATCCGGCGCGGCTTCCGGGGTTTCATACTTGTGTTGGATCTGGTGGAGAAAGGCAAACTCCAGAGTGGTATAAAGAGAAAGGGATAGAGACGTTGTATGAAGATCCGGTAGAAAACATTGATATTGAAAAGCAAACTTTGACAACGAGTTCTGGGAAGCTTCTGAAGTATGGATCACTTATTATTGCTACAGGATGTACATCCTCAAGGTTTCCTGAGAAAATTGGGGGAAACCTTGACGGTGTCCACTATATTCGGGATATTGCAGATGCTGATGCCCTGGTTTCATCATTGGAAAAAGCAAAAAAGGTTGTAGTAGTTGGAGGTGGTTATATAGGAATGGAGATTGCTGCTGCAGCTGTTGCTTGGAAACTTGATACAACAATCATATTTCCAGATGATCACTTTTTACAAAGATTGTTCACTCCTTCTCTTGCCCGTAGATATGAAGAACTCTACCAAAAGAATGGAGTTAAAATATTGAAGGGTGCCTCCATTAAGAATTTGGAAGCTAGTTCTAATGGTAACGGACGTGTAGCTGCTGTGAAACTTGAAGATGGGTCTATTGTTGAAGCAGATACGGTAATTATAGGCATTGGAGCGAAGCCTGCTGTTGGTCCCTTTGAGAGATTGGGTTTGAATACTGATGTTGGTGGTATACAGGTTGATGGTCAGTTCCGGACAAGCATTCCAGGAATATTTGCTGTTGGTGATGTTGCTGCCTTCCCTTTAAAGATATACAACCGTGTTGCTCGAGTGGAACATGTAGATCATGCTCGTAGATCGGCACAGCACTGTGTGAAAGCATTACTCAGTGCACAAACTAACACGTATGATTATCTTCCGTACTTCTACTCAAGGGTTTTTGAATATGAAGGAAACACTAGAAAAGTGTGGTGGCAGTTCTTCGGAGACAATGTTGGAGAAACGGTTGAAATCGGAAACTTTGATCCTAAAATAGCTACTTTTTGGATTGAATCTGGTAAGCTGAAGGGAGTTCTTCTTGAAAGCGGGAGCGCTGAGGAATTTCAGCTCCTGCCTGAACTTGCCAGAAAGCAACCTTCTATTGATAAAGCCAAGCTTGAAAGCGCAACCTCAGTGGAAGAGGCCCTAGACATTGCTAGGAGATCCTTGCAAGCCGTTGTCTAG 1449 0.4458 MAAIANSLSLKHTLATRFPQTTTRTRLSSTSRTFHRCYASYANENREYVIIGGGNAAGYAARTFVEHGVADGRLCIVTKEAVAPYERPALTKAYLFPPDKNPARLPGFHTCVGSGGERQTPEWYKEKGIETLYEDPVENIDIEKQTLTTSSGKLLKYGSLIIATGCTSSRFPEKIGGNLDGVHYIRDIADADALVSSLEKAKKVVVVGGGYIGMEIAAAAVAWKLDTTIIFPDDHFLQRLFTPSLARRYEELYQKNGVKILKGASIKNLEASSNGNGRVAAVKLEDGSIVEADTVIIGIGAKPAVGPFERLGLNTDVGGIQVDGQFRTSIPGIFAVGDVAAFPLKIYNRVARVEHVDHARRSAQHCVKALLSAQTNTYDYLPYFYSRVFEYEGNTRKVWWQFFGDNVGETVEIGNFDPKIATFWIESGKLKGVLLESGSAEEFQLLPELARKQPSIDKAKLESATSVEEALDIARRSLQAVV 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03596 482 Gene3D - 383 469 IPR016156 GO:0016491|GO:0050660
Vifa6g03596 482 Gene3D - 49 366 IPR036188 -
Vifa6g03596 482 PRINTS FAD-dependent pyridine nucleotide reductase signature 49 68 - -
Vifa6g03596 482 PRINTS FAD-dependent pyridine nucleotide reductase signature 157 175 - -
Vifa6g03596 482 PRINTS FAD-dependent pyridine nucleotide reductase signature 203 221 - -
Vifa6g03596 482 PRINTS FAD-dependent pyridine nucleotide reductase signature 318 340 - -
Vifa6g03596 482 PRINTS FAD-dependent pyridine nucleotide reductase signature 292 308 - -
Vifa6g03596 482 Pfam Pyridine nucleotide-disulphide oxidoreductase 47 363 IPR023753 GO:0016491
Vifa6g03596 482 Gene3D - 171 300 IPR036188 -
Vifa6g03596 482 PRINTS Pyridine nucleotide disulphide reductase class-I signature 47 69 - -
Vifa6g03596 482 PRINTS Pyridine nucleotide disulphide reductase class-I signature 333 340 - -
Vifa6g03596 482 PRINTS Pyridine nucleotide disulphide reductase class-I signature 293 307 - -
Vifa6g03596 482 PRINTS Pyridine nucleotide disulphide reductase class-I signature 203 228 - -
Vifa6g03596 482 PANTHER APOPTOSIS-INDUCING FACTOR 1 46 468 - -
Vifa6g03596 482 SUPERFAMILY FAD/NAD(P)-binding domain 38 370 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03596 Vifa-Chr6 1181025623 1181031161 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03596 154 344 Acyl Lipid Metabolism Gene Families AT1G48030 27.363 1.89e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03596 K08232 - gmx:100819919 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03596 6 1181025623 1181031161 Vifa6g03596 6 1181025623 1181031161 ECH