Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03589 ATGGATGTGTTATTGTTGTTACTGCCTCTATTGGTTGCTTTGCCAGGCTTGAATGTAGTCGAGAGCCGAAAAACACTGGCTGTGGAGCACTATGTTGAGTACTGTGCTGTGAGCTGCAGAGCTTACAGTGCCTCAGTGACGGAGTTTGGAGCGGTTGGCGATGGACAAACTTCGAACACGCGGGCCTTTCAGACGGCTGTAGATCATCTGAGTCAGTACTCGTCGAACGGCGGGTCTCAACTTTATGTTCCACCAGGAAGATGGTTGACTGGTAGTTTCAATCTCACCAGTCATTTCACTTTGTTCCTACACAAAGATGCAGTCATTCTTGCCTCTCAGGACGAAAGTGAGTGGCCGGTGATTGAGCCCTTACCGTCTTATGGTCGAGGGAGGGACACTCAAGGCGGACGATATAGCAGTCTAATTTTTGGAACCAACCTCACTGATATAGTCATAACAGGGGACAATGGAACATTAGATGGACAAGGTGAAGTGTGGTGGCAAAAGTTCCATAAGGGGGAGCTTAGCTATACCAGGCCTTATCTGATTGAAATCATGCACTCAGATGATATTCAGATATCGAATCTCACTTTGGTTAATTCTCCATCCTGGAATGTTCATCCTGTTTATAGCAGCAACATTGTTGTTCGAGGCATCACAATTCTCGCTCCTGTGAATTCGCCAAATACAGATGGGATCAACCCTGACTCTTGCACGAACACGCGGATTGAGGACTGTTATATAGTGTCCGGGGATGACTGTGTGGCTGTGAAAAGTGGTTGGGATGAGTATGGTATAGCTTATGGAATGCCAACTAAGCAGCTGGTGGTTAAAAGACTCACTTGCATTTCTCCAACCAGTGCTGTGATTGCTTTAGGGAGCGAAATGTCGGGTGGTATTGAAGACGTACGGGCCGAGGACATTCTAGCGATCGATTCCGAATCAGGAGTTAGGATCAAAACTGCTGTTGGAAGAGGAGGATATGTGAGAGACATATATGTTAGAAGGATGACCATGAAAACAATGAAATGGGCATTTTGGATGACAGGAGATTATGGCTCTCATGCTGATAACAACTACGATCCTAACGCGATTCCTGTGGTTCAGAATATTAATTACCACGATATGGTTGCTGAAAACGTGACTATGGCTGCAAAGTTGGAGGGTATATCTAATGCACCGTTTACCGGAATCTGCATATCCAATGTAACAATTGGACTAGCAAAGAAGGCGAAAAAACTGCCTTGGAATTGCACGAATATAGCCGGGATTTCAAGTGGTGTCACTCCTGTGCCATGTGGCCTATTGCCAGACCAAGGAGTAGAGGATATTGCGGCATGCACCTTCCCAGAAGGAGGTTTGCCTGTTGAAGATGATGTTGAGGTTCAAACTTGTACTTATAGAATAAATTTGTGA 1416 0.4555 MDVLLLLLPLLVALPGLNVVESRKTLAVEHYVEYCAVSCRAYSASVTEFGAVGDGQTSNTRAFQTAVDHLSQYSSNGGSQLYVPPGRWLTGSFNLTSHFTLFLHKDAVILASQDESEWPVIEPLPSYGRGRDTQGGRYSSLIFGTNLTDIVITGDNGTLDGQGEVWWQKFHKGELSYTRPYLIEIMHSDDIQISNLTLVNSPSWNVHPVYSSNIVVRGITILAPVNSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVVKRLTCISPTSAVIALGSEMSGGIEDVRAEDILAIDSESGVRIKTAVGRGGYVRDIYVRRMTMKTMKWAFWMTGDYGSHADNNYDPNAIPVVQNINYHDMVAENVTMAAKLEGISNAPFTGICISNVTIGLAKKAKKLPWNCTNIAGISSGVTPVPCGLLPDQGVEDIAACTFPEGGLPVEDDVEVQTCTYRINL 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03589 471 SUPERFAMILY Pectin lyase-like 33 436 IPR011050 -
Vifa6g03589 471 PANTHER PECTIN LYASE-RELATED 16 457 - -
Vifa6g03589 471 Pfam Glycosyl hydrolases family 28 134 422 IPR000743 GO:0004650|GO:0005975
Vifa6g03589 471 Gene3D - 24 426 IPR012334 -
Vifa6g03589 471 Pfam Pectate lyase superfamily protein 45 102 IPR024535 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03589 Vifa-Chr6 1179364920 1179366756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03589 33 468 Glycoside Hydrolase AT4G23500 74.312 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03589 - - gmx:100785841 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03589 6 1179364920 1179366756 Vifa6g03589 6 1179364920 1179366756 ECH