Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03572 ATGGGATACGGTGAAAAAGGAAGACCATTCAAAAAGCCAAAAGCCGCATCTAAATTCGAAGATTCGAGAAAAGGATTCGCTGAGGATGACGAAGAGGATGATGCATACGACGATGACGAAGGAAAAACAAAGGATTTTAGCAAATTAGAGTTGAAACCGGATCACACGAATCGTCCTCTTTGGGCTTGTGACAATGGCCGGATATTCCTTGAAACTTTCTCGCCTTTGTACAAGCAAGCTTATGATTTTCTCATTGCCATCGCGGAGCCGGTTTGCAGGCCGGAGTCTATGCATGAGTATAATCTTACTCCGCATTCGCTGTATGCTGCGGTTTCGGTTGGTTTGGAAACTGAAACTATTATATCGGTTTTGAACAAGTTGTCCAAGACCAAGCTTCCTAAAGAGATGATTAAGTTTATTCATGATTCTACTGCAAATTATGGGAAAGTGAAACTTGTTCTTAAGAAGAATCGGTACTTTGTGGAATCTCCGTTTCCAGAGGTGTTGAAGACACTGCTTAGGGATGATGCTATAGCTCGAGCAAGGATCATTTCTGAGGGTTCATATGGAGATAGATTTACAATCAGCAAAGCAGCAGGTGAAATTGAAGGCACTCATGACGAGTTGCTAAATGAAGCAGAAGTAGCAGCTGCTGCAGAAGAGAAAGAAACTCATGCATTCGAAGTTGATCCTGCTCAGGTTGAAAATGTTAAGCAACGTTGCTTGCCGAATGCCTTAAATTATCCTATGTTGGAGGAGTATGACTTCCGAAATGATACAGTGAACCCAGACCTTGACATGGAACTAAAGCCTCAAGCACAACCTCGGCCATATCAAGAGAAGAGCCTTAGTAAAATGTTTGGAAATGGTAGAGCAAGATCTGGTATCATAGTTTTACCCTGCGGTGCTGGAAAGTCCCTAGTTGGTGTTTCAGCAGCTTGCCGGGTAAAAAAGAGCTGTCTTTGTTTGGCAACAAATGCTGTCTCTGTGGATCAGTGGGCTTTTCAGTTTAAACTATGGTCAACTATTCGAGAAGAACAAATATGTCGTTTCACATCTGATAGCAAAGAGAGATTCCGCGGTAACGCTGGAGTTGTTGTGACAACATATAATATGGTTGCTTTTGGGGGTAAACGGTCTGAAGAATCTGAAAAGATCATTGAAGAAATAAGAAACCGAGAATGGGGATTGCTGCTCATGGACGAGGTACATGTGGTTCCTGCCCATATGTTTCGGAAAGTCATCAGTATCACTAAATCTCACTGCAAACTTGGGCTCACAGCCACACTTGTGAGAGAGGACGAGCGAATTACAGATCTGAACTTCCTAATTGGTCCCAAATTGTACGAGGCAAATTGGTTAGATCTTGTAAAAGGTGGATTTATCGCAAATGTACAGTGTGCTGAAGTATGGTGTCCAATGACAAAAGAGTTTTTTACCGAGTATCTAAAGAAAGAGAATTCCAAGAAGAGACAGGCCCTTTATGTGATGAATCCAAATAAATTCAGAGCATGTGAGTTTCTCATAAATTACCATGAAAGGGCACGTGGTGATAAAATTATAGTCTTTGCTGATAATCTTTTTGCTCTTACCGAGTATGCCATGAAACTCCGCAAACCAATGATATATGGTGCTACAAGCCATGTTGAGCGGACAAAAATTCTACATGCATTCAAAACTAGCAAAGACGTAAATACTGTTTTTCTTTCCAAGGTTGGTGACAACTCAATCGATATTCCTGAAGCAAATGTTATAATTCAGATCTCTTCACATGCTGGTTCAAGGCGTCAAGAAGCTCAACGTCTTGGTCGTATTCTTAGGGCAAAGGGGAAGCTTCAGGATAGGATGGCAGGTGGCAAAGAGGAGTATAATGCATTTTTTTATTCCCTTGTGTCGACTGATACCCAGGAGATGTATTACTCAACTAAGAGGCAGCAATTTTTAATTGATCAGGGTTACAGCTTTAAGGTAATTACAAGCTTGCCTCCATCTGATGAAGGATCTCGCTTGAACTATCATCATCTCGAAGATCAATTGGCACTTCTTGGAAAGGTACTGAATGCTGGTGATGATGCAGTTGGGTTAGAGCAACTAGAAGAAGATTCCGATGAACTAGCTCTTAAGAGTGCCCGCCGTTCTCAGGGATCAATGAGTGCAATGTCAGGTGCCAAAGGGATGGTTTATATGGAGTACAGTAATGGACGTAAAGGCCAAATGATCAAGAGCAAGCCGAAAGATCCAGCAAAGAGACACCACTTATTTAAAAGACGATATGGCCCAACCTAA 2286 0.4182 MGYGEKGRPFKKPKAASKFEDSRKGFAEDDEEDDAYDDDEGKTKDFSKLELKPDHTNRPLWACDNGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIISVLNKLSKTKLPKEMIKFIHDSTANYGKVKLVLKKNRYFVESPFPEVLKTLLRDDAIARARIISEGSYGDRFTISKAAGEIEGTHDELLNEAEVAAAAEEKETHAFEVDPAQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRVKKSCLCLATNAVSVDQWAFQFKLWSTIREEQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFTEYLKKENSKKRQALYVMNPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILHAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLNYHHLEDQLALLGKVLNAGDDAVGLEQLEEDSDELALKSARRSQGSMSAMSGAKGMVYMEYSNGRKGQMIKSKPKDPAKRHHLFKRRYGPT 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03572 761 Gene3D - 265 456 IPR027417 -
Vifa6g03572 761 CDD SF2_C_XPB 467 631 - -
Vifa6g03572 761 MobiDBLite consensus disorder prediction 1 42 - -
Vifa6g03572 761 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 286 448 IPR014001 -
Vifa6g03572 761 Pfam Helicase conserved C-terminal domain 60 183 IPR032830 -
Vifa6g03572 761 MobiDBLite consensus disorder prediction 745 761 - -
Vifa6g03572 761 PANTHER RAD25/XP-B DNA REPAIR HELICASE 49 731 - -
Vifa6g03572 761 SMART ultradead3 271 452 IPR014001 -
Vifa6g03572 761 Pfam ERCC3/RAD25/XPB C-terminal helicase 456 704 IPR032438 -
Vifa6g03572 761 SMART helicmild6 531 609 IPR001650 -
Vifa6g03572 761 Pfam Type III restriction enzyme, res subunit 274 430 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vifa6g03572 761 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 503 669 IPR001650 -
Vifa6g03572 761 PRINTS Xeroderma pigmentosum group B protein signature 518 540 - -
Vifa6g03572 761 PRINTS Xeroderma pigmentosum group B protein signature 712 731 - -
Vifa6g03572 761 PRINTS Xeroderma pigmentosum group B protein signature 287 309 - -
Vifa6g03572 761 PRINTS Xeroderma pigmentosum group B protein signature 584 609 - -
Vifa6g03572 761 PRINTS Xeroderma pigmentosum group B protein signature 58 78 - -
Vifa6g03572 761 PRINTS Xeroderma pigmentosum group B protein signature 256 282 - -
Vifa6g03572 761 PRINTS Xeroderma pigmentosum group B protein signature 460 482 - -
Vifa6g03572 761 PRINTS Xeroderma pigmentosum group B protein signature 498 513 - -
Vifa6g03572 761 PRINTS Xeroderma pigmentosum group B protein signature 144 163 - -
Vifa6g03572 761 PRINTS Xeroderma pigmentosum group B protein signature 394 414 - -
Vifa6g03572 761 PRINTS Xeroderma pigmentosum group B protein signature 565 583 - -
Vifa6g03572 761 PRINTS Xeroderma pigmentosum group B protein signature 621 644 - -
Vifa6g03572 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 384 705 IPR027417 -
Vifa6g03572 761 CDD DEXHc_XPB 267 436 - -
Vifa6g03572 761 MobiDBLite consensus disorder prediction 735 761 - -
Vifa6g03572 761 Gene3D - 457 697 IPR027417 -
Vifa6g03572 761 FunFam Probable DNA repair helicase RAD25 265 456 - -
Vifa6g03572 761 MobiDBLite consensus disorder prediction 1 25 - -
Vifa6g03572 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 450 IPR027417 -
Vifa6g03572 761 FunFam Putative DNA repair helicase rad25 457 699 - -
Vifa6g03572 761 NCBIfam DNA repair helicase rad25 45 756 IPR001161 GO:0003678|GO:0006289|GO:0006367
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03572 Vifa-Chr6 1171739033 1171747266 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03572 K10843 - gmx:100789550 1370.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03572 6 1171739033 1171747266 Vifa6g03572 6 1171739033 1171747266 ECH