Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03555 ATGTCTTCCCCAAGCAAACGGCGAGACATGGATGTCATGAAGCTGATGATGACTGATTACAAAGTGGAGACGATCAATGATGGCATGCAAGAGTTCTTTGTCGAATTTCACGGGCCTCAAGACAGTCTTTATCAAGGAAGTGTGTGGAAGATAAGAGTGGAGTTACCTGATGCTTATCCTTATAAGTCTCCTTCTATTGGTTTTGTCAACAAAATTTACCATCCTAACGTTGACGAAATGTCTGGTGCGGTTTGCTTAGATGTTATTAATCAGACTTGGAGTCCAATGTTTGATCTTGTTAATGTGTTCGAAGTGTTTCTTCCTCAACTTCTTATATACCCCAATGCAGCAGATCCATTGAATAGTGAAGCTGCTGCCTTGATGATGCATGACCGTGCTGCATATGAACAAAAAGTCAAAGAATATTGTGAAAAATATGCCAAGCCAGAAGATATTGGAGCTTCTAAGGAAGAAGATTCTAGTGATGAAGAGCTGAGTGAAGATGATGATTATGCCTCGAGTGATGACGACATTGCCGGCAAACCTGATCCCTAA 555 0.4108 MSSPSKRRDMDVMKLMMTDYKVETINDGMQEFFVEFHGPQDSLYQGSVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGAVCLDVINQTWSPMFDLVNVFEVFLPQLLIYPNAADPLNSEAAALMMHDRAAYEQKVKEYCEKYAKPEDIGASKEEDSSDEELSEDDDYASSDDDIAGKPDP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03555 184 CDD UBCc 10 143 IPR000608 -
Vifa6g03555 184 Gene3D Ubiquitin Conjugating Enzyme 1 161 IPR016135 -
Vifa6g03555 184 SUPERFAMILY UBC-like 3 148 IPR016135 -
Vifa6g03555 184 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Vifa6g03555 184 FunFam Ubiquitin-conjugating enzyme 5, E2 1 159 - -
Vifa6g03555 184 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Vifa6g03555 184 MobiDBLite consensus disorder prediction 150 184 - -
Vifa6g03555 184 MobiDBLite consensus disorder prediction 156 174 - -
Vifa6g03555 184 SMART ubc_7 4 148 - -
Vifa6g03555 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 136 - -
Vifa6g03555 184 Pfam Ubiquitin-conjugating enzyme 12 142 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03555 Vifa-Chr6 1168943754 1168946560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03555 3 150 Miscellaneous Gene Families AT3G17000 24.359 1.63e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03555 K10576 - gmx:100791133 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03555 6 1168943754 1168946560 Vifa6g03555 6 1168943754 1168946560 ECH