Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03553 ATGGCCCGTTTGGTTTTGCCATCGAAGACTTTGGCCTTTTCCAGGAAGAGTCTACTGGGTTTGATCTCACCTGCTCCTCTCCAGATTAATTATTTTCAGAAAATCTCGAAAAGTAGTGTCAGATATAGGCATTTTCTTTCATCAGAGGTTATTCTCCGAAAGAATTGTTGTGCATTTTATTCTTCTGTGCCTGCTGTCAAGAAAACGAGTAGGAATTTAATTTGTTCGGTTGCTACCGAGGATTTAGCCAAGCAAGTTGAAGAGCCGAAAATGGCAATGCCAACAGAAATTTTCTTGAAGGATTACAAAAAGCCTGATTACTACTTTGACACTGTGGATCTGAAGTTTTTGTTGGGAGAGGAGAAGACTATAGTTAGTTCTAAAATTGCTGTTTTTCCTCGCACTGAAGGTTCTGCCCCCCCGCTGGTTTTGGATGGACTAGACATGATTTTAGTGTCAGTTAAGATTAATGGCAAGGCCTTGAAGGAGGAAGATTATCATGTGGATGCACGTCATCTAATAATCCGGTCACCTCCTACTGGTAAATATGATCTTGAAATCGTTACTGAGATTTTCCCGCAGAAAAACACATCACTAGAGGGGCTTTATAAGTCATCTGGGAATTTCTGTACTCAATGTGAGGCAGAAGGCTTCCGTAAAATTACGTATTATCAGGATCGGCCAGATATAATGGCAAAGTATACAGTTCACATTGAGGGAGACAAATCACTGTATCCAGTATTGTTGTCTAATGGAAACCTGGTTGAAGAGGGTGACTTGGAGGGTGGTAAACATTATGCTATTTGGGAGGACCCTTTCAAGAAGCCTTGTTATCTGTTTGCTTTGGTTGCTGGGCAACTGCAGAGCAGAGATGACATATTTACTACTCGCTCTGGTAGGAGGGTGTCCCTTAGAATCTGGACGCCTGCAGATGATGTGCCTAAGACTGCTCATGCTATGTATTCTCTGAAAGCAGCTATGGAGTGGGACGAAGATGTTTTTGGACTTGAATATGACCTGGACCTCTTCAATATTGTTGCTGTGCCAGATTTTAATATGGGGGCCATGGAAAACAAAAGCTTGAATATTTTCAATTCCAAGCTTGTACTGGCTTCTCCAGAGACTGCTTCAGATGCAGATTATGCTGCAATATTAGGAGTTATTGGCCACGAGTATTTCCACAATTGGACTGGCAACAGAGTGACATGTCGCGACTGGTTCCAGCTTAGTCTGAAGGAAGGTCTCACTGTTTTTCGTGATCAGGAATTCTCATCTGACATGGGAAGTCGTACTGTAAAGCGGATTGGTGATGTTTCAAAACTTCGGAATTACCAGTTTCCACAGGACGCAGGTCCCATGGCCCATCCAGTGCGACCACACTCTTACATCAAGATGGACAATTTCTACACAGGCAAGCTTCTCTATTTTTAG 1431 0.4263 MARLVLPSKTLAFSRKSLLGLISPAPLQINYFQKISKSSVRYRHFLSSEVILRKNCCAFYSSVPAVKKTSRNLICSVATEDLAKQVEEPKMAMPTEIFLKDYKKPDYYFDTVDLKFLLGEEKTIVSSKIAVFPRTEGSAPPLVLDGLDMILVSVKINGKALKEEDYHVDARHLIIRSPPTGKYDLEIVTEIFPQKNTSLEGLYKSSGNFCTQCEAEGFRKITYYQDRPDIMAKYTVHIEGDKSLYPVLLSNGNLVEEGDLEGGKHYAIWEDPFKKPCYLFALVAGQLQSRDDIFTTRSGRRVSLRIWTPADDVPKTAHAMYSLKAAMEWDEDVFGLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRTVKRIGDVSKLRNYQFPQDAGPMAHPVRPHSYIKMDNFYTGKLLYF 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03553 476 Pfam Peptidase M1 N-terminal domain 131 279 IPR045357 -
Vifa6g03553 476 CDD M1_APN 101 470 - -
Vifa6g03553 476 Gene3D Neutral Protease Domain 2 373 475 IPR027268 -
Vifa6g03553 476 PANTHER PUROMYCIN-SENSITIVE AMINOPEPTIDASE 90 470 IPR012779 GO:0008270
Vifa6g03553 476 FunFam Putative aminopeptidase N 289 372 - -
Vifa6g03553 476 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 297 470 - -
Vifa6g03553 476 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 96 285 IPR042097 -
Vifa6g03553 476 Pfam Peptidase family M1 domain 321 469 IPR014782 GO:0008237|GO:0008270
Vifa6g03553 476 Gene3D tricorn interacting facor f3 domain 104 287 IPR042097 -
Vifa6g03553 476 Gene3D - 288 372 - -
Vifa6g03553 476 PRINTS Membrane alanyl dipeptidase (M1) family signature 351 361 IPR001930 GO:0006508
Vifa6g03553 476 PRINTS Membrane alanyl dipeptidase (M1) family signature 387 402 IPR001930 GO:0006508
Vifa6g03553 476 PRINTS Membrane alanyl dipeptidase (M1) family signature 406 418 IPR001930 GO:0006508
Vifa6g03553 476 PRINTS Membrane alanyl dipeptidase (M1) family signature 219 234 IPR001930 GO:0006508
Vifa6g03553 476 PRINTS Membrane alanyl dipeptidase (M1) family signature 269 284 IPR001930 GO:0006508
Vifa6g03553 476 FunFam Aminopeptidase N 104 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03553 Vifa-Chr6 1167765080 1167768780 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03553 K01256 - gmx:100775476 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03553 6 1167765080 1167768780 Vifa6g03553 6 1167765080 1167768780 ECH