Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03545 ATGCCACCATTCGCAGGCTCTCTTCACCAATCTCAACCAAGACCAGACTCCAACATAGTCACCATCGACGTTGGCGGCCAAATGTTCCAAACCACCAAACAAACCTTAACCTCAGCCGGTCCCAAAACCTTCTTCTCAAGAATCTCCCAAACCTCTTCCCCTTTCACACCTTTCATCGACAGAGACCCCGAAATCTTCTCCCTCTTCCTCTCCCTCCTCCGCACCGGTAACCTCCCTTCCAAAGCCAAATCCTTCGACCTCCAAGACCTCGTCGTCGAGTCCCGCTTCTACGGCATCGAGAATCTCCTCGTTAATTCCTTCTCTAACCCTTCCCAGTTAGAGCCTTTCAATCTCCAGAGGTCCCTCCACTTACCGCTTAACGGTAGAGACTCTCCTTCTTCCATCGCAACCACCTCTCACGGCTCTCTCCATGTTTCTCACGGTAGCAAGATCACCACTTTTGATTGGTCACTCCGTCGGAAATCTACTATCCTAACGCACTTCACCGCCGTTGATTCTTTATTAGCTTTATCTCCGTCGCTCGCCGCTGCCGGTGCTAACGACTTCTCCGGCCTACAGATTCTTGATTTGGAAAACGGTTACGTAAAAGAGACACTCAATTGGGAGAATGTAACCAAATCGGGATCCACCGTTCAAGCCATTGGATCCTCTCCCGATAACATGTTCGTCAGCTTTGAATCCTCCCGGAGAAACTCCAATTCTATACTTGTTTATGATTTGAATAGCTTGACACCCGTCACTGAAATTGGTCACAATGAGATCTACGGCGCCGATATTGATTCGGCGATACCGGCTACGAAATTGCAGTGGATTGAGAGTCATAACTTGTTAATGGCGTCTGGATCACACAGCGGGCCTTCCGGTGTTTCCGGGAATATTAGGTTATGGGATGTTCGTTCTGGGAATATTGTTTGGGAGATTTCAGAGAAAGTTGATTGTTTTGCCGATCTAACAGTTTCTGATTCCTTGTCTGCTATGTTTAAAGTTGGTGTCAATTCTGGTCAAGTGTTTTATATGGATTTGAAGAACTTGGGTTCTGACAAAACCGAATGGGTTTGTTTAGGTGATAAGAGAAAAGTCATGAATGGTAAAAAAGAAGGCTTTGGTTGCAAAATTGAGACACAGGGGAATCAAGTGTTTTGCAGTAAGGGTGGTGATGTAGAGCTTTGGTCAGAGATTATAATGGGTGGTTCTAGTAACAGGATTTTCAAGAAGAATTTGATGGGGAGGGGACAAGATATAGGGGGTGCTAAGATTAATAATTTGGCATTTGGAGGGAGTAGAATGTTCTTGACAAGAAAAGATTTGCAGTGTGTTGAGGTTTGGCAGAGTTCTTCAAGGGAACTTTGA 1371 0.4573 MPPFAGSLHQSQPRPDSNIVTIDVGGQMFQTTKQTLTSAGPKTFFSRISQTSSPFTPFIDRDPEIFSLFLSLLRTGNLPSKAKSFDLQDLVVESRFYGIENLLVNSFSNPSQLEPFNLQRSLHLPLNGRDSPSSIATTSHGSLHVSHGSKITTFDWSLRRKSTILTHFTAVDSLLALSPSLAAAGANDFSGLQILDLENGYVKETLNWENVTKSGSTVQAIGSSPDNMFVSFESSRRNSNSILVYDLNSLTPVTEIGHNEIYGADIDSAIPATKLQWIESHNLLMASGSHSGPSGVSGNIRLWDVRSGNIVWEISEKVDCFADLTVSDSLSAMFKVGVNSGQVFYMDLKNLGSDKTEWVCLGDKRKVMNGKKEGFGCKIETQGNQVFCSKGGDVELWSEIIMGGSSNRIFKKNLMGRGQDIGGAKINNLAFGGSRMFLTRKDLQCVEVWQSSSREL 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03545 456 SUPERFAMILY POZ domain 17 105 IPR011333 -
Vifa6g03545 456 Gene3D Potassium Channel Kv1.1; Chain A 12 109 IPR011333 -
Vifa6g03545 456 Gene3D - 133 455 IPR015943 GO:0005515
Vifa6g03545 456 PANTHER BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER 14 453 IPR045068 -
Vifa6g03545 456 CDD BTB_POZ_KCTD-like 20 97 - -
Vifa6g03545 456 SMART BTB_4 18 114 IPR000210 GO:0005515
Vifa6g03545 456 Pfam BTB/POZ domain 20 106 IPR003131 GO:0051260
Vifa6g03545 456 SUPERFAMILY WD40 repeat-like 131 359 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03545 Vifa-Chr6 1166308746 1166310116 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03545 - - tpra:123915936 813.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03545 6 1166308746 1166310116 Vifa6g03545 6 1166308746 1166310116 ECH