Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03539 ATGTGGTTTCTTGGTTGGAAAGGACCGTCGGGCTTCTCAGCTTCTTCAACCGCCGATCAAGTTACTCACGGAATCGATGGAACCTCTCTCACTGCCATCGTCACAGGAGCAACAAGTGGTCTTGGTTTGGAAACAACCAGGGTTCTTGCTTTGCGTGGTGTTCATGTTGTTATGGCTGTCAGGAATGTGAATAATGATCTTAGCTCTTTGGCTTCTGTTAGGAAATTTGCATCGGATTTTAATTCCTCCGGTCTTCCACTCAATATTCTTATTAACAATGCAGGGTTGATGGCTACTCCATTCATGCTTTCTCAAGACAATATTGAATTGCAGTTTGCAACCAATCATTTAGGCCATTTTCTGTTGACAAACCTTTTAATAGAGACTATGAAAAAAACTGTAAGGGAATGCAACCGGGAAGGAAGGATAGTTATTGTATCATCGGAGGCTCACCGATTTGCATATAGTGAAGGGATTCGTTTTGATAAGATCAACAATGAATCAGAATACAGCAGTTATTTTGCTTATGGACAATCGAAACTTGCGAATATTTTGCATGCCAATGAGCTTGCAAGACGCTTGAAGGAAGAAGGGGTGCAAATAACAGTTAACTCTCTTCATCCTGGTACAATTATAACAAATATTTTGCGGCACCATGGTTATTTTAATGCCGTTGCTAATATGGTGGGCAAGTACCTACTTAAAAATGTGCAACAGGGAGCTGCAACTCAATGTTATCTTGCATTGCATCCACTGGTCAAGGGAATATCTGGTGAATACTTTGCGGATAGTAATAAGGCAAACCCAACCACTTTAGCTAAAGATTCAGAGCTGGCACAAAAACTATGGGAATTAAGTGTAAGTTTGTCTAATACAAAGTAG 882 0.4048 MWFLGWKGPSGFSASSTADQVTHGIDGTSLTAIVTGATSGLGLETTRVLALRGVHVVMAVRNVNNDLSSLASVRKFASDFNSSGLPLNILINNAGLMATPFMLSQDNIELQFATNHLGHFLLTNLLIETMKKTVRECNREGRIVIVSSEAHRFAYSEGIRFDKINNESEYSSYFAYGQSKLANILHANELARRLKEEGVQITVNSLHPGTIITNILRHHGYFNAVANMVGKYLLKNVQQGAATQCYLALHPLVKGISGEYFADSNKANPTTLAKDSELAQKLWELSVSLSNTK 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03539 293 Pfam short chain dehydrogenase 63 155 IPR002347 -
Vifa6g03539 293 PANTHER RETINOL DEHYDROGENASE 9 289 - -
Vifa6g03539 293 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 31 265 IPR036291 -
Vifa6g03539 293 CDD retinol-DH_like_SDR_c_like 31 283 - -
Vifa6g03539 293 PRINTS Glucose/ribitol dehydrogenase family signature 176 195 IPR002347 -
Vifa6g03539 293 PRINTS Glucose/ribitol dehydrogenase family signature 85 96 IPR002347 -
Vifa6g03539 293 PRINTS Glucose/ribitol dehydrogenase family signature 135 151 IPR002347 -
Vifa6g03539 293 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Vifa6g03539 293 PRINTS Glucose/ribitol dehydrogenase family signature 199 216 IPR002347 -
Vifa6g03539 293 Gene3D - 26 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03539 Vifa-Chr6 1164173353 1164175691 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03539 33 269 Acyl Lipid Metabolism Gene Families AT3G55290 27.206 1.72e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03539 - K19329 gmx:100785176 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03539 6 1164173353 1164175691 Vifa6g03539 6 1164173353 1164175691 ECH