Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03537 ATGGCTTTGCCGTTTCTCACTCTTCCACACTTTCTCTCTCCCACAATCATTAAACCCAATTCAACCATCACTCTAAAACCCAAACACTTTCTTCTTCCTTCTACACCTTTCTTTCGTCCCTTATCCTTTCCGTTACTTACTCTTCGACCTCCCGCCGCAGTCCGACCCGACGCCAAATTCTATCCAAACCCCGCCGACGACGACCCGCCGGAAGTTGCCGAAGACACCGCTCACGGCTACTCCAAATTCCAACAAATCCAACTCCAAGCCGACCGCGCTCGCCTTCGCGAAGAACAAGATTTCAAAAACAACCAAGCCACTTACCTCGCCGCCATCGCCGACGCCGAAGACGCTCCCGACGAACCTTCCTCCGTTGAATCCTCTCAAGACGATTTGTTCGGTGAAATCGATAAAGCTATCGCTCTCAAACGCAAAGAGTTCGTTAAACAAGGTCTTCTCAAACCTAATCCCGCCAAAAAAGACATTCAAGAAGTCGTTAACGAAGAGCTTCAACCAGATGAAGTCAACGATGTCGAAGAAATCGACCGACTCAAAGGACTTGCGGTGAATTCCGACGAAACTCCGGGAGAGTTCCCCGGAGATGGTGATTTAGATTCTAATTCTGATTCTTCGTTTGATTTAGATTTTGATAGTTTAGGGAAGAGTAATAAAGCTAGAATAGTTGAACCTATGTTTAAGATGAGTTTGGCTGAGCTTTTAGATGAGAGCAAAGTGGTTCCTGTTTCGGTTTACGGAAATTTAGAAGTTGAAATTAGTGGAATTCAACATGATTCTAGGCTTGTTACTTCTGGCAATTTGTTTGTGTGTTGCGTTGGAAGTAAAAACGATGGACATATGTTTTTGACTGAGGCTGATAAAAGAGGAGCTATTGCTGTTGTGGCTAGTAAAGAGATTGATATTGAGGATACTTTGGGTTGTAAGGCTTTGGTTATTGTGGAGGATACCAATGCTGTTCTTGCTACATTGGCTGCTTCTTTTTATAGGTATCCTTCGAGAAACATGGCAATTATTGGGATAACTGGGACTTATGGTAAAACGACGACCACATATTTGCTTAAAAGTATGTATGAAGCCATGGGTTTACGTACCGGGATGTTTAATGATATTGCTTGTTATGTTCATGGGGATAATCAGTTGGATTCGCCTTATGCGATGTTGGATGCTGTTTTGGTTCAGAATTTGATGGCTAAGATGCTTCATAATGGAACTGGATCTGTGGTTTTTGAGGCTTCTTCTTGTGGGTTAGCGCAGGGGAAATATGATGAGGTTGATTTTGATGTTGCTGTTTTTACGAATTTGGTGGCGGGTGATGAGGAGGAAGAGGATAGAGATTCAAATGCTAAGCTGTTTTCGAGGATGGTGGATCCTGAGCGGCATAGGAAAGTTGTTAACATAGATGATCCGAATGCGGCTTCGTTTGTTTCATTGGGGAGTCCTGATGTTCCTGTTGTGACTTTTGCTATGGAGAATAAAAATGCAGATGTTCATCCCTTGAAATTTGAACTCTCCCTGTTTGAGACGCAGGTGTTGGTTAATACACCGGCTGGAATTCTGGAAATTTCGTCCGGTTTACTAGGAAGGCACAATGTTTACAACATTCTTGCTGCTGTAGCAGTTGGCATTGCTGTTGGGGCACCCTTGGAGAATATTGTTAGAGGGATTGAAGAGGTTGATGCAGTTCCTGGGAGGTGTGAGTTAATTGATGAGGAACAGGCATTTGGGGTGATAGTGGACTATGCTCGAACTCCTGATGCTTTGTCTAGATTACTTGATTCTGTAAGAGAGCTTCAACCTCGCAGGATTATAACTGTGATTGGTTCTTGTGGCGAGGATGAAAGGGGGAAGAGACCCTTGATGACAAAAATAGCAACAGATAAAAGTGAAGTGACCATGCTAACATCTGACAATCCCAAGAGTGAAGATCCATTGGATATTTTGGATGATATGTTGGCTGGGGTAGGATGGACAATGCAAGAGTACCTGAAATATGGAGAGAATGACTACTATCCTCCTCTTCCGAATCGTCATAGGCTTTTTCTCCATGACATTAGAAGGGTAGCTGTGCGAGCTGCAGTTGCAATGGGGGAGGAGGGTGATGTTGTTGTGATTGCTGGTAAAGGTCATGAAACATATCAAATAGAAGGTGAAAAAAGAGATTACTTTGATGACCGAGATGAGTGCAGGGAGGCATTGCAGTACGTTGACGAGCTTCACCAAGCTGGAATAGATACAAGCGAATTTCCATGGCGGTTACCAGAGAGCCACTGA 2289 0.4386 MALPFLTLPHFLSPTIIKPNSTITLKPKHFLLPSTPFFRPLSFPLLTLRPPAAVRPDAKFYPNPADDDPPEVAEDTAHGYSKFQQIQLQADRARLREEQDFKNNQATYLAAIADAEDAPDEPSSVESSQDDLFGEIDKAIALKRKEFVKQGLLKPNPAKKDIQEVVNEELQPDEVNDVEEIDRLKGLAVNSDETPGEFPGDGDLDSNSDSSFDLDFDSLGKSNKARIVEPMFKMSLAELLDESKVVPVSVYGNLEVEISGIQHDSRLVTSGNLFVCCVGSKNDGHMFLTEADKRGAIAVVASKEIDIEDTLGCKALVIVEDTNAVLATLAASFYRYPSRNMAIIGITGTYGKTTTTYLLKSMYEAMGLRTGMFNDIACYVHGDNQLDSPYAMLDAVLVQNLMAKMLHNGTGSVVFEASSCGLAQGKYDEVDFDVAVFTNLVAGDEEEEDRDSNAKLFSRMVDPERHRKVVNIDDPNAASFVSLGSPDVPVVTFAMENKNADVHPLKFELSLFETQVLVNTPAGILEISSGLLGRHNVYNILAAVAVGIAVGAPLENIVRGIEEVDAVPGRCELIDEEQAFGVIVDYARTPDALSRLLDSVRELQPRRIITVIGSCGEDERGKRPLMTKIATDKSEVTMLTSDNPKSEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNRHRLFLHDIRRVAVRAAVAMGEEGDVVVIAGKGHETYQIEGEKRDYFDDRDECREALQYVDELHQAGIDTSEFPWRLPESH 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03537 762 MobiDBLite consensus disorder prediction 190 209 - -
Vifa6g03537 762 Gene3D - 337 570 IPR036565 GO:0005524|GO:0009058
Vifa6g03537 762 Pfam Mur ligase family, glutamate ligase domain 567 650 IPR004101 GO:0009058|GO:0016881
Vifa6g03537 762 Gene3D - 572 749 IPR036615 GO:0009058|GO:0016881
Vifa6g03537 762 NCBIfam UDP-N-acetylmuramyl-tripeptide synthetase 256 739 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Vifa6g03537 762 SUPERFAMILY MurD-like peptide ligases, catalytic domain 337 564 IPR036565 GO:0005524|GO:0009058
Vifa6g03537 762 PANTHER MUR LIGASE FAMILY MEMBER 184 748 - -
Vifa6g03537 762 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 234 738 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Vifa6g03537 762 FunFam UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 572 745 - -
Vifa6g03537 762 Pfam Mur ligase middle domain 346 546 IPR013221 GO:0005524|GO:0009058|GO:0016881
Vifa6g03537 762 SUPERFAMILY MurE/MurF N-terminal domain 231 337 IPR035911 -
Vifa6g03537 762 Gene3D - 235 335 - -
Vifa6g03537 762 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 567 739 IPR036615 GO:0009058|GO:0016881
Vifa6g03537 762 Pfam Mur ligase family, catalytic domain 257 334 IPR000713 GO:0009058|GO:0016881
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03537 Vifa-Chr6 1163502308 1163505879 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03537 - - gmx:100776096 1097.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03537 6 1163502308 1163505879 Vifa6g03537 6 1163502308 1163505879 ECH