Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03534 ATGGCAATGGATCCCAAACGCGTCAAATCCGACCTCGTTCTCATCCTTGACTTCGGTTCCCAATATACGCACCTCATCACTCGCCGCATTCGCAGCCTCTCCGTCTTCTCCCTCTGCCTCAACGGCACCTCCTCCCTCCAATCCATCACCGAACTCAATCCTTCCCTCGTCATTCTCTCTGGCGGTCCCCATTCCGTCCATACCCCCGACTCCCCTTCCTTCCCCGACGGCTTTCTCCACTGGGCTCAGGACAATTCCGTCCCCGTCCTCGGTATTTGCTATGGACTCCAGCTTCTCGTTCACCGTCTCGGAGGTGAAGTCCGCGTCGGAAACAAGCAGGAGTATGGACGGATGGAAATCCATGTCCAAAATGCTTCTGCTCTTTACCCGGTAGATAAAGTTGGACATAATCAACTTGTCTGGATGAGCCATGGTGATGAAGCTGTCACTCTTCCTTCTGGTTTTAATGTCGTCGCCCGAAGCCAACAGGGTGCTGTTGCTGCTATAGAGAATCCCTCTGCCAAATTATACGGCCTTCAGTATCACCCTGAGGTGACTCATACGCCGGAGGGAATGGATACTCTGAAGCATTTTCTGTTTGATGTTTGTGGAATTTCGGCAGAGTGGAAGATGGAGGATGTGTTGGAGGAAGAGATTAGAGTGATCAATAATACAGTGGGGCCTAAGGAGCATGTTATTTGTGCTCTATCAGGCGGTGTTGATTCCACTGTTGCTGCTACTATAGTTCATAAAGCTATTGGGGATAGGCTTCATTGTGTTTTTGTTGACAATGGCTTGCTAAGGTATAAGGAGCGGGAACGGGTGATGGAAACGTTCGAAAAGGATCTTCATTTACCAGTTGTATGTGTTGATGCTGTAGATCAATTTCTTACAAAGCTAAAAGGTGTGACGGATCCGGAAGTTAAGAGGAAAATAATTGGGAAAGAGTTTATCTGCATTTTTGATGACTTTGCTCATGAGCTGGAGAAGAAACTGGGAACCAGACCTTCTTACTTGGTTCAAGGGACCTTGTACCCTGATGTGATTGAATCATGCCCACCACCTGGAAGTGGGAGAACCCATTCCCATACCATCAAGAGCCATCATAATGTTGGCGGTCTGCCAAAGGACATGAAACTGAAACTTATTGAACCACTTAAGCTTCTTTTCAAGGATGAGGTTCGTCAATTAGGGAGGATCATGGATGTTCCTGAGGGATTTCTAAAACGTCATCCCTTCCCTGGGCCTGGTCTTGCAGTTAGAGTATTGGGTGACGTGACTGAAGATAATGCATTAGATATTCTCCGACAGGTTGATGAGATTTTCATTCAGTCAATCAAAGATGCTGGCCTCTATGATGTAATATGGCAAGCCTTTGCAGTTTTCTTACCAATAAGATCTGTTGGAGTTCAAGGTGATCAAAGAACACACTCCCATGTTGTTGCACTCAGAGCTGTTACGAGTCAAGATGGAATGACAGCAGACTGGTACTACTTTGAGCACAAGTTCCTTGATGATGTCTCACGCAAAATCTGTAACGGTGTCCGTGGTGTGAATCGTGTTGTGCAAGATATTACGTCAAAGCCTCCATCAACAATTGAGTGGGAATAA 1611 0.4668 MAMDPKRVKSDLVLILDFGSQYTHLITRRIRSLSVFSLCLNGTSSLQSITELNPSLVILSGGPHSVHTPDSPSFPDGFLHWAQDNSVPVLGICYGLQLLVHRLGGEVRVGNKQEYGRMEIHVQNASALYPVDKVGHNQLVWMSHGDEAVTLPSGFNVVARSQQGAVAAIENPSAKLYGLQYHPEVTHTPEGMDTLKHFLFDVCGISAEWKMEDVLEEEIRVINNTVGPKEHVICALSGGVDSTVAATIVHKAIGDRLHCVFVDNGLLRYKERERVMETFEKDLHLPVVCVDAVDQFLTKLKGVTDPEVKRKIIGKEFICIFDDFAHELEKKLGTRPSYLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRIMDVPEGFLKRHPFPGPGLAVRVLGDVTEDNALDILRQVDEIFIQSIKDAGLYDVIWQAFAVFLPIRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVSRKICNGVRGVNRVVQDITSKPPSTIEWE 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03534 536 FunFam GMP synthase [glutamine-hydrolyzing] 421 536 - -
Vifa6g03534 536 CDD GMP_synthase_C 231 535 IPR001674 GO:0003922|GO:0005524|GO:0006164|GO:0006177
Vifa6g03534 536 Gene3D - 421 536 - -
Vifa6g03534 536 SUPERFAMILY Class I glutamine amidotransferase-like 11 239 IPR029062 -
Vifa6g03534 536 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 198 431 - -
Vifa6g03534 536 SUPERFAMILY GMP synthetase C-terminal dimerisation domain 415 536 - -
Vifa6g03534 536 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 12 208 - -
Vifa6g03534 536 ProSiteProfiles GMP synthetase ATP pyrophosphatase (GMPS ATP-PPase) domain profile. 209 410 IPR025777 GO:0003921|GO:0005524
Vifa6g03534 536 Gene3D - 6 206 IPR029062 -
Vifa6g03534 536 Pfam Glutamine amidotransferase class-I 15 201 IPR017926 -
Vifa6g03534 536 CDD GATase1_GMP_Synthase 13 199 IPR004739 GO:0003922|GO:0005524|GO:0006177
Vifa6g03534 536 Pfam GMP synthase C terminal domain 445 535 IPR001674 GO:0003922|GO:0005524|GO:0006164|GO:0006177
Vifa6g03534 536 NCBIfam glutamine-hydrolyzing GMP synthase, N-terminal domain 13 205 IPR004739 GO:0003922|GO:0005524|GO:0006177
Vifa6g03534 536 PANTHER GMP SYNTHASE-RELATED 11 536 - -
Vifa6g03534 536 NCBIfam glutamine-hydrolyzing GMP synthase, C-terminal domain 214 536 IPR001674 GO:0003922|GO:0005524|GO:0006164|GO:0006177
Vifa6g03534 536 Gene3D HUPs 210 420 IPR014729 -
Vifa6g03534 536 FunFam GMP synthase [glutamine-hydrolyzing] 10 207 - -
Vifa6g03534 536 PRINTS Glutamine amidotransferase superfamily signature 57 66 - -
Vifa6g03534 536 PRINTS Glutamine amidotransferase superfamily signature 88 99 - -
Vifa6g03534 536 PRINTS Glutamine amidotransferase superfamily signature 178 191 - -
Vifa6g03534 536 PRINTS Anthranilate synthase component II signature 13 27 - -
Vifa6g03534 536 PRINTS Anthranilate synthase component II signature 57 66 - -
Vifa6g03534 536 PRINTS Anthranilate synthase component II signature 178 191 - -
Vifa6g03534 536 PRINTS Anthranilate synthase component II signature 88 99 - -
Vifa6g03534 536 FunFam GMP synthase [glutamine-hydrolyzing] 210 420 - -
Vifa6g03534 536 Hamap GMP synthase [glutamine-hydrolyzing] [guaA]. 10 536 IPR022955 GO:0003922|GO:0006177
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03534 Vifa-Chr6 1162206509 1162209111 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03534 K01951 - gmx:100812448 966.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03534 6 1162206509 1162209111 Vifa6g03534 6 1162206509 1162209111 ECH