Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03517 ATGGCCACCGAAACCAGCAACGACCCAAAATCCGTCTACGATTTCACTCTCAAGGATGCTAAGGGGAATGATCTAGATCTTGCTACTTACAAGGGAAAAGTTCTTCTCATTGTTAATGTTGCTTCCAAATGTGGCATGACCAATTCAAATTATGTGGAGTTGAATCAACTATATGACAAGTACAAACTAAAAGGCTTTGAGATTCTGGCATTTCCAAGTAATCAATTTGGTGAGGAAGAACCTGGAACCAATGATCAAATATTGGATTTCGTCTGCACCCGCTTCAAATCAGAATTCCCCATCTTTGATAAGATTGAAGTGAATGGAGAGAACTCTGCTCCCTTGTATAAATTTTTAAAGTCAGGTAAATGGGGAATTTTTGGAGATGATATTCAGTGGAACTTTGCAAAGTTTCTAGTTGACAAGGATGGCCAAGTAGTGGACCGATACTATCCCACAACCTCTCCTCTTAGCCTTGAGAGAGACATCTCTAAACTACTTGGTGTTGAATGA 513 0.3977 MATETSNDPKSVYDFTLKDAKGNDLDLATYKGKVLLIVNVASKCGMTNSNYVELNQLYDKYKLKGFEILAFPSNQFGEEEPGTNDQILDFVCTRFKSEFPIFDKIEVNGENSAPLYKFLKSGKWGIFGDDIQWNFAKFLVDKDGQVVDRYYPTTSPLSLERDISKLLGVE 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03517 170 ProSiteProfiles Thioredoxin domain profile. 6 168 IPR013766 -
Vifa6g03517 170 Gene3D Glutaredoxin 1 169 - -
Vifa6g03517 170 ProSiteProfiles Glutathione peroxidase profile. 2 170 IPR000889 GO:0004602|GO:0006979
Vifa6g03517 170 PIRSF Glutathion_perox 1 169 IPR000889 GO:0004602|GO:0006979
Vifa6g03517 170 ProSitePatterns Glutathione peroxidases active site. 32 47 IPR029759 -
Vifa6g03517 170 PRINTS Glutathione peroxidase family signature 66 82 IPR000889 GO:0004602|GO:0006979
Vifa6g03517 170 PRINTS Glutathione peroxidase family signature 131 140 IPR000889 GO:0004602|GO:0006979
Vifa6g03517 170 PRINTS Glutathione peroxidase family signature 30 47 IPR000889 GO:0004602|GO:0006979
Vifa6g03517 170 Pfam Glutathione peroxidase 12 120 IPR000889 GO:0004602|GO:0006979
Vifa6g03517 170 CDD GSH_Peroxidase 11 163 IPR000889 GO:0004602|GO:0006979
Vifa6g03517 170 PANTHER GLUTATHIONE PEROXIDASE 5 167 IPR000889 GO:0004602|GO:0006979
Vifa6g03517 170 FunFam Glutathione peroxidase 3 169 - -
Vifa6g03517 170 SUPERFAMILY Thioredoxin-like 11 167 IPR036249 -
Vifa6g03517 170 ProSitePatterns Glutathione peroxidases signature 2. 69 76 IPR029760 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03517 Vifa-Chr6 1157314479 1157316639 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03517 K00432 - jre:109014460 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03517 6 1157314479 1157316639 Vifa6g03517 6 1157314479 1157316639 ECH