Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03439 ATGAGTGCAATTTGCAACATACTCAATGTAGTATTGCCTCCATTGTCATTGATTATACTCCCTATCACCATGATACCTTATCTTTTCTTCAAATTGCTTCTTCATGTAAAAAAAATGGTGTACAAAGAAAACATGGCAAGAAAAGTAGTACTAATCACAGGGGCAGCCTCAGGAATTGGGGAGCGAATAGCTTACGAATATGCTAGACGAGGAGCAAGATTGTCTCTTGTTGACATTAGAAAGGAGAATCTTGTAGCAGTGGCTGAAATGGCAAGATCTCTTGGTTCCCCTGATGTTATCATCATTGGCGCTGATGTTTCCAACGTTCAAGAGAGTAAACAATTTGTTGATGATACAATGGACCACTTTGAACAACTGGATCATCTAGTAAATAATGCTGGAATCGGAATTCCAGTGTTGATAGAGGATTGTTCTGATATTACTAAATACACTTCAACTATAGATATAAATTTCTGGGGAGCAGTTCATGGGACTTTACATGCAATCCCACATCTCAAAAAAAGTAAAGGAAGGATCGTAGTGATTGCTTCGACTTGTGGATGGTTCCCACTTCCAAGATTAAGTATCTACAATGCTAGTAAGGCGGCGGTAATAAGTTTCTTTGAGACTCTAAGAATTGAACTTGGTTGGTCTATTGGCATAACAATCGTCACACCAGGTTTTGTCAAAACAAAACTAGCATCTAAGGCTTATGAAGATGAGCCTAGTTTTAGAATAATTCCATTGGGGTCAGCAATAGAATGTGCCGAAGACATAGTGAAAGGTGCATGCAGGGGAGATATGTATGTGACAAATCCTTCATGGGTCAATGTGTTGTTTCCTTTTAAGGTGTTTTATCCTGAGCTGGTGGACTGGGTCCAACAACACATCTTTGGACTTTTCCCAAACCCTTCTTGTAAGAAAGGCAATATTAAGACAGATTAA 945 0.3894 MSAICNILNVVLPPLSLIILPITMIPYLFFKLLLHVKKMVYKENMARKVVLITGAASGIGERIAYEYARRGARLSLVDIRKENLVAVAEMARSLGSPDVIIIGADVSNVQESKQFVDDTMDHFEQLDHLVNNAGIGIPVLIEDCSDITKYTSTIDINFWGAVHGTLHAIPHLKKSKGRIVVIASTCGWFPLPRLSIYNASKAAVISFFETLRIELGWSIGITIVTPGFVKTKLASKAYEDEPSFRIIPLGSAIECAEDIVKGACRGDMYVTNPSWVNVLFPFKVFYPELVDWVQQHIFGLFPNPSCKKGNIKTD 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03439 314 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 185 IPR002347 -
Vifa6g03439 314 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 216 IPR002347 -
Vifa6g03439 314 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Vifa6g03439 314 Gene3D - 32 300 - -
Vifa6g03439 314 PANTHER RETINOL DEHYDROGENASE-RELATED 45 294 - -
Vifa6g03439 314 Pfam short chain dehydrogenase 48 241 IPR002347 -
Vifa6g03439 314 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 184 212 IPR020904 GO:0016491
Vifa6g03439 314 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 41 297 IPR036291 -
Vifa6g03439 314 PRINTS Glucose/ribitol dehydrogenase family signature 217 234 IPR002347 -
Vifa6g03439 314 PRINTS Glucose/ribitol dehydrogenase family signature 197 216 IPR002347 -
Vifa6g03439 314 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Vifa6g03439 314 PRINTS Glucose/ribitol dehydrogenase family signature 171 187 IPR002347 -
Vifa6g03439 314 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03439 49 250 Acyl Lipid Metabolism Gene Families AT1G24360 31.250 6.65e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03439 K22418 - gmx:100808990 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03439 6 1131670562 1131672016 Vifa6g03439 6 1131670562 1131672016 ECH