LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa6g03438	ATGCACATACGCCGTCTCAGACTCGACGACGACGAAGACGCCGTCGACACAGTCGACCCTCAGCCACCACCCCACACATCCACAAATCAACCTCAAAGTTCTCCCAATTTCCCCCCGGAGCCCGTCGAAATCTCCGACGACAATTTCATCGACGTCCCCAATGACCCCATTCCGCCCACTCCTCCACCTATTCCCGAACCTCCGGCTTCGGACTGTCCCGTCAACGATTTTCTCCGCCGACTCGGGTTTTGCTTGAAGAGAGACTCGCTTGCTGATTGTCTCCGCGAACTAGGGGGTTCGGTGAACGGTTTCCAAGGGTTTGATGTTGCGAGAAAAGCTAAACTCTGTTTCGAGCAGTTTTTGTTTTCCGATCTTAATTTCTGTGGTAGCGGCGTGCTTCCTCCTAATGTGGAGTCCATGCATCTCGATGTTCTTCCAGGTCCCTACGTATTGCAGGTTGATGAGATTCTCAATATCAGCTGTCCTCTAAAAAGCAGATATCAACAGGCTCCTCCAGGCCTTAAAAGGTGCCTGAAATTGTCAATGACCGATGGTAATCAGAGAGTTTTTGGAATGGAGTACCGGCCTATTAAAGCTCTTGAAGTTTGTGCATCTTCTGGTTTTAAGGTTGCAATCTCTAATGTACAAGTGCGCCATGGGCTTTTGATGCTGGTTCCTGAGACCATTCAAGTATTGGGGGGATTAGTTGAGGAGCTGGATGCAGCTCGAAACCGGCTGATTGATGAACTAAATAAGCCAGCTAGGGGAAAAAGAACCAGAGATGGGGTGCTTCCCCCTTTATCAGTCCGAGCGACTCTTGCTGCATGGCCTTTAAGTAGAGTTGATGATCCCAGTAACAATGGCTCAACATTACACAGTACTGATACTGTCCAGGCAAACAACCAAGGTACTGGCCACAACATTCCTGGCACCAGTAACAACTTAACTGAAGACTCTTCGCGCATGGGTGCACAAACTTCTACTTCCAATTCAATGCCCCACACGGTTTCAAACGTGGAGCAAACAAATGTTAACATGCGGTGCCAGCAGGGTGCCAGTGTTACAACTGGATATACTACACACATGGGTGCACAGAATGCTACTTCCAATTCAATACCCCACATGGTTTCAAACGTTGAGCGAATGAATATTGATACGCCTGGCCAGCGGGGTGCCAGAATAGCAACTGAACACGCTTCACCTATGGATGCAGAAAATGCTACTTCTAATTCAATACCTCATGTGGTTTCAAATGTGCAGCCAAATGTGGAGCCAATGAATATTGATACGCCGGGCCAGCGGGGTGCCAGAATAGCAACTGAACACGCTTCACCTATGGATGCACACAATGCTACTTCTAATTCAATACCTCACATGGTTTCAAATGTGCAGCCAATGAATATTGATATGCAGCGGGGTACCAATCCTGTGTACCATCATAATTCAATGGCTAACCGGAATTCTTCAATAGCTGAGGAGATGCATACAGATACTGCTAATACTTTCAGGGAAAACCCTGTTGGCAACCAATCTTCTCACAGAAACTCGAATGTTGCAGCGGTACATGAAGACACTGTTCACATAGCAAGTTCCATGACTTCTGAGCGCTTTCCTGTTTCTGAAATTGTGGATACAGACAGGAACAGGGTTCCTGTAGTCACAGATAATACTCCTCTAAATGGATCTTCGTCCACTGATTTTAACTATGAAGATATCTTGATGGATGATGTCAGTGACAATCCACTCATACTTTCTGGAGACCCTGAAGTTCCTTTCACATACTTAGCTAGTTTGTCAGCCAAGTGGGCTGCAATGAAGGAGACGGATTCTCTGGTTCAGGGTAAAATTAAGTGCTTTCTAACCGGTGTTAAAGGATTCCAATATAAGAAAAGGACAACCTACGAGCTTCAGGCATATGTAGACGATGGTAGTCTTATTTCTGAAATCCTCATTGATCATGATGTTGTACAGAAAGGAATTGGTTATTCTCCCGTGGAGGTCACTGCAGCTCTTTCTTCTTCTGACACAAATATAGTCCAGAACATGAAGGAGACTATGCGCAAATTCCAAGCTTTCTTAGCAAACTTTGAGGGAGTAATGCTTGTGGAATTAAATAGAAAACATTCCCTTCCACTGGCTCTAGAAATGAGTCAAGGCTGTCCTAAATCTGATGCGTGGTCCCTTCTAAGAAGGCTTAAGTCTCTTCCCCCTGCACAAGCTCTAAACCATTTTCCTTCAGACACAATCGTTTTATCCCCATAA	2262	0.458	MHIRRLRLDDDEDAVDTVDPQPPPHTSTNQPQSSPNFPPEPVEISDDNFIDVPNDPIPPTPPPIPEPPASDCPVNDFLRRLGFCLKRDSLADCLRELGGSVNGFQGFDVARKAKLCFEQFLFSDLNFCGSGVLPPNVESMHLDVLPGPYVLQVDEILNISCPLKSRYQQAPPGLKRCLKLSMTDGNQRVFGMEYRPIKALEVCASSGFKVAISNVQVRHGLLMLVPETIQVLGGLVEELDAARNRLIDELNKPARGKRTRDGVLPPLSVRATLAAWPLSRVDDPSNNGSTLHSTDTVQANNQGTGHNIPGTSNNLTEDSSRMGAQTSTSNSMPHTVSNVEQTNVNMRCQQGASVTTGYTTHMGAQNATSNSIPHMVSNVERMNIDTPGQRGARIATEHASPMDAENATSNSIPHVVSNVQPNVEPMNIDTPGQRGARIATEHASPMDAHNATSNSIPHMVSNVQPMNIDMQRGTNPVYHHNSMANRNSSIAEEMHTDTANTFRENPVGNQSSHRNSNVAAVHEDTVHIASSMTSERFPVSEIVDTDRNRVPVVTDNTPLNGSSSTDFNYEDILMDDVSDNPLILSGDPEVPFTYLASLSAKWAAMKETDSLVQGKIKCFLTGVKGFQYKKRTTYELQAYVDDGSLISEILIDHDVVQKGIGYSPVEVTAALSSSDTNIVQNMKETMRKFQAFLANFEGVMLVELNRKHSLPLALEMSQGCPKSDAWSLLRRLKSLPPAQALNHFPSDTIVLSP	753

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa6g03438	753	Gene3D	-	124	250	IPR042470	-
	Vifa6g03438	753	MobiDBLite	consensus disorder prediction	282	335	-	-
	Vifa6g03438	753	FunFam	RecQ-mediated instability protein (DUF1767)	124	250	-	-
	Vifa6g03438	753	Pfam	RecQ mediated genome instability protein	173	244	IPR013894	-
	Vifa6g03438	753	Pfam	RecQ mediated genome instability protein	85	169	IPR013894	-
	Vifa6g03438	753	Pfam	Recq-mediated genome instability protein 1, C-terminal OB-fold	591	732	IPR032199	GO:0000166
	Vifa6g03438	753	SMART	DUF1767_2	75	168	IPR033472	-
	Vifa6g03438	753	MobiDBLite	consensus disorder prediction	1	71	-	-
	Vifa6g03438	753	MobiDBLite	consensus disorder prediction	54	70	-	-
	Vifa6g03438	753	PANTHER	RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1	69	734	-	-
	Vifa6g03438	753	MobiDBLite	consensus disorder prediction	280	335	-	-
	Vifa6g03438	753	MobiDBLite	consensus disorder prediction	24	38	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa6g03438	K10990		-	gmx:100803734	699.123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa6g03438	6	1131663401	1131668047	Vifa6g03438	6	1131663401	1131668047	ECH