Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03427 ATGGATCTTCCTGTGAAAGAAGAAGCATTGGAAATTCCAATTCCAATTCAAACCGAACCGGACCGGACCCAAAGGAGAAAACCCGGTCCGCACGTTCCGCCTCCTCCCGGCTCGGTCATTGACCTCAGTAGCAGTAGCAGCGATTCCGACTCGGATTCCGATTCCGTCGGGGATTTGGAAACGCTTGTCGCGAGTGTGGTCCAATCGGCGGAGAGTCCGTCCAAGAAAAGAAAGGTGAATGATAAGGTGGCGATTTTGCCGGCGGGGTTTCTTAGTCCGTTGCCGGCGCCGTCGCAGAATGCTATTCTGTCTTTGCCGGCGCCGGAGTGGGCTTCCACGTCGAATAGGTTGAATCGGAATGTTGCATATACGCTTAAGGGATGTAAGCAGTTTTGGAAAGCGGGAGATTATGACGGTTCGCCTGGTCGGGGGTTTGAATCTTCTTCAGTTGGTATGGATCATGTCAGGGTTCACCCCAAGTTTCTACATTCTAATGCCACAAGTCATAAGTGGGCTCTTGGAGCTTTTGCTGAGCTTTTGGACAATGCATTGGATGAGGTTTGTAATGGTGCCACATATGTAAATGTAGATATGATTGAGAGTAAGAAAGATGGCTCCAAGATGTTGCTAGTTGAAGATAACGGCGGTGGGATGGATCCTGATAAAATACGTCAATGCATGTCGCTGGGATATTCCATGAAAAGCAAGATGGCAAATACAATCGGACAATATGGAAATGGCTTTAAAACAAGTACCATGAGGCTTGGGGCTGATGTAATTGTGTTCTCCCGTTGTATAGGAAAAGATGGGAAAAGGTCTACACAGAGCATAGGCTTGCTGTCTTATACATTTTTGAGGAATACAGGGAAGGAAGACATCGTAGTGCCCATGCTGGACTACGAAAGAGATGGACAGGGATGGAAAAAGATGTTACGAACTTCTCTTGATGATTGGAAGAATAATGTTGAGACAGTAGTTCAGTGGTCACCATTTGCTGATGAGTCCGACCTTCTTCGTCAGTTCAACCTGTTGAAAGACCAAGGTACACGGGTAATTATATACAATCTCTGGGAGGATGACCAAGGTCAGCTGGAACTCGATTTTGAAGACGATCCACATGATATTCAAATAAAAGGTGTAAATCGAGATGAGAAAAACATCAAGATGGCTAAAGATTTTCCAAACTCTACACACTTCTTAACTTATCGACACTCACTGAGGAGTTACGCTTCAATTTTATATCTGAGGTTTCCTCAAGGCTTCCGAATTATTCTTCGTGGGAAAGATGTTTTGCATCACAATATAGTCAATGATATGATGTTTTCTCAGGAGGTCACGTACAGGCCTCAATCAGGAGTTGCCGATGGGATTCTAAAGGATTCAAATATGGTTGCTATTGTCACGATCGGGTTTGTCAAGGATGCAAAACATCATATTGATGTTTCAGGGTTTAATGTCTATCACAAGAATCGGCTCATCAAGCCATTCTGGAGGATCTGGAATCCAGCAGGCAGTGGTGGCCGTGGGGTCATAGGTGTATTGGAAGCCAACTTTGTTGAACCTGCTCATGACAAGCAAGGCTTTGAACGTACATTAGTTTTGTCAAGACTGGAGCAACGGCTAATACAAATGCAGAAAACTTATTGGGGAAGTAACAGCCATAAAATTGGCTATGCTTCAAATCGAGTTAGAAAAGAAAACAACAGTTTTGCTGGTAAAGATCCATCTCCCGATCCTGTTCCAGAACCATCTCAATTGAAAAGGAAATCTTCTGCCACAAATGGCCAGGCATCATCACCATTGGCATCAGACGAACTGCATTCACATTCGAAACAGAAACGTATACGAACAGAATCCAAAAGATTTAGTGAATACAGAAATGGTCACTCGGCAGTTTCCCCTATAAGTATGAGTCAAAGTTCATCAGAAGAAGCATCATACGCTGATGATACCAGTGATCAAAATGAAAATGTCTCATCAAAGAACCATGCAAAGACTGATAGTCGAAAGATTTCTAGTGTTGGAAAATCTTCTGGAAAGGATAATGTAAATTTTCAGGATTCTACACCAAGGGGGAATGCCTGGCAGTCTACTCAAGGATCTAACCCACAGGGAAAAGATGTTAATGGTCGTGAGCAACCACTACCTGATTTATCAGCTTTTGAACAGTTGAGAAAAGAGAATTGCAAGTTGAAAGAGAGATTAGAGAAGAGAGATGAAGAAAGGTTAGGGGAAGTATCGCAAGCTTTACAGTATGAGAAAGATAAGCGCATATCTCTTGAAGCTCAGCTCCGTGATGCTGAACAAAAGATTGAAGATATGAACAAGGAACAAGAAACTCTAATTGATGTGTTTGCTGAAGAGAGGGATAGGCGGAATGCTGAAGAAAAAAACTTGAGAAAGAAGCTTCAGGAAGCATCAAATACCATCCAAGAGCTGCTGGAGAAGGTACGATTACTTGAAAGGAAGACTTCAAGTGGCAAAGTAGTATGA 2493 0.432 MDLPVKEEALEIPIPIQTEPDRTQRRKPGPHVPPPPGSVIDLSSSSSDSDSDSDSVGDLETLVASVVQSAESPSKKRKVNDKVAILPAGFLSPLPAPSQNAILSLPAPEWASTSNRLNRNVAYTLKGCKQFWKAGDYDGSPGRGFESSSVGMDHVRVHPKFLHSNATSHKWALGAFAELLDNALDEVCNGATYVNVDMIESKKDGSKMLLVEDNGGGMDPDKIRQCMSLGYSMKSKMANTIGQYGNGFKTSTMRLGADVIVFSRCIGKDGKRSTQSIGLLSYTFLRNTGKEDIVVPMLDYERDGQGWKKMLRTSLDDWKNNVETVVQWSPFADESDLLRQFNLLKDQGTRVIIYNLWEDDQGQLELDFEDDPHDIQIKGVNRDEKNIKMAKDFPNSTHFLTYRHSLRSYASILYLRFPQGFRIILRGKDVLHHNIVNDMMFSQEVTYRPQSGVADGILKDSNMVAIVTIGFVKDAKHHIDVSGFNVYHKNRLIKPFWRIWNPAGSGGRGVIGVLEANFVEPAHDKQGFERTLVLSRLEQRLIQMQKTYWGSNSHKIGYASNRVRKENNSFAGKDPSPDPVPEPSQLKRKSSATNGQASSPLASDELHSHSKQKRIRTESKRFSEYRNGHSAVSPISMSQSSSEEASYADDTSDQNENVSSKNHAKTDSRKISSVGKSSGKDNVNFQDSTPRGNAWQSTQGSNPQGKDVNGREQPLPDLSAFEQLRKENCKLKERLEKRDEERLGEVSQALQYEKDKRISLEAQLRDAEQKIEDMNKEQETLIDVFAEERDRRNAEEKNLRKKLQEASNTIQELLEKVRLLERKTSSGKVV 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03427 830 MobiDBLite consensus disorder prediction 567 723 - -
Vifa6g03427 830 Pfam Morc6 ribosomal protein S5 domain 2-like 404 549 IPR041006 -
Vifa6g03427 830 FunFam MORC family CW-type zinc finger protein 4 158 362 - -
Vifa6g03427 830 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 174 374 IPR036890 -
Vifa6g03427 830 MobiDBLite consensus disorder prediction 671 708 - -
Vifa6g03427 830 Coils Coil 750 823 - -
Vifa6g03427 830 Gene3D - 159 358 IPR036890 -
Vifa6g03427 830 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 174 277 - -
Vifa6g03427 830 MobiDBLite consensus disorder prediction 629 659 - -
Vifa6g03427 830 MobiDBLite consensus disorder prediction 1 58 - -
Vifa6g03427 830 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 84 804 IPR045261 GO:0016887
Vifa6g03427 830 MobiDBLite consensus disorder prediction 39 58 - -
Vifa6g03427 830 MobiDBLite consensus disorder prediction 586 605 - -
Vifa6g03427 830 MobiDBLite consensus disorder prediction 606 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03427 Vifa-Chr6 1128587608 1128595609 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03427 - - gmx:100786679 1085.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03427 6 1128587608 1128595609 Vifa6g03427 6 1128587608 1128595609 ECH