Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03402 ATGGGAAAAGATAACCAATTATCTGCCATGGAAGTCGATGATCCGAAGTCAACGAGTTCTGATCAGATAGTACCTAAATTCTCTATTAATGTATTGCAGCTTTTGAAATCAGCACAAATGCAGCATGGTCTGCGCCATGGAGATTACACTCGCTATCGGAGGTATTGCACAGCTCGGTTAAGGAGGTTGTATAAATCATTGAAGTTCACTCATGGTCGTGGCAAGTATGCGAAAAGAACCTTAACTGAGGCTAATGTCACTGAAGTAAGGTTTCTTCATGTGATACTCTATTCGGCAGAGAGAGCTTGGAGTCATGCCATGGAGAAAAGGCAGCTTCCGAACGGACCAAATGCGTCTCAACGTATCTATCTGATTGGTAGGCTGCGGAAGGCAGTAAAGTGGGCTACTCTGTTTTCACAATTGTGTGCAGTGAAGGCAGATTCTAGAACATCTTTGGAAGCTGAGGCTTATGAGTCCTATATGAAGGGGAGTTTGTTGTTTGAGCAAGACCAGAACTGGGATGTGGCTTTAAAGCACTTCAAAAGTGCTAGGGCTGTATACGAGGAATTAGGGAAATATGGAGATCTGGATAACCAAGTTTTGTGTCGGGAGCGGGTTGAGGAACTAGAACCTAGTATCAGATACTGCCTTCACAAAATTGGCCAGTCAAATCTACAAACCTCTGAACTATTAAACATTGGTGATATGGAAGGTCCTGCATTAGACCTATTTAAAGCTAAACTAGAGGCTGCCATGGCTGAGGCAAGATCTCAACAAGCTGCTTCCATGACAGAATTTCATTGGCTTGGCCATAGATTTCCAATATCAAATGCCAAAACAAGGGTTGCCATTTTGAAAGCCCAGGAGCTGGAGAAAGATATACATGGTCCTTTGGCAGAAAATATTTCCGCAGACAAAAGACTTGTTATTTTTGACAAAATCTTTTCGGCATACCATGATGCTAGAGGCTATATTCGGGCTGATTTGGCCACCGCAGGAAGTGCAGAAAGTGTGAAAGATGATTTGAATGGTCTTGATAAGGCTGTCAGCGCTGTCTTAGGAGAAAGAACAATTGAGCGCAACCTCTTGTTGGTCAAGATTGCAAAAAGTAAACTTGCAAAGCGTATTGATGATAAAAATGAAAAAGTCACCAAACCTGAAGAGCTTGTTCGCTTATATGATCTCTTGCTACAGAATACATCTGATCTATCTGATTTAGTCAGTTCTGGAAGGGACCAAAAGTCAGAAGAAGTTAGCTTTGCTGAAGAGTGTTCATTCAAAAGTTTGGCTTTTCGAGCAGAAAGGTGCTTTTATGTTGCAAAGTCATACAGTGTGGCTGGAAAGAGGGCTGAAGCATATGCTTTGTACTGCCGTGCTCGCAATTTAGCTGAAGATGCCTTAAAAAAGCTTCAAACATTAGATGGTATTAATAAGACTGTGATGAAAGAATTAGAGATCTTGTGCAATGAAGCCCGCTCCAACAGTTGTATAGAACATGCATTGGGGATCATGGAGGAGAAGAGGACTCAAGAGAAAATCTCCGAAGGAATCTCAAATATATCATTGACCGGAGCTGAGCGGTTGGAGAAGTTCCTATTAGAGAAACTTGATGTTTATGAGTCTGCTGTGGGTGATTCAAATGTGAAATCTACACCCCGCATTGCACCCTTCCCCCCAGCTTTCCAGGCAATTGCCCGCAACCCTATTGTGCTGGACCTGGCGTATAACACTATCGAGTTCCCAGATATTGAACACAGGATGAAGAAGGACAAAAGAGCAAAGGGCGGCTTTATAAGTAGAATATTTGGATGA 1812 0.4249 MGKDNQLSAMEVDDPKSTSSDQIVPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRGKYAKRTLTEANVTEVRFLHVILYSAERAWSHAMEKRQLPNGPNASQRIYLIGRLRKAVKWATLFSQLCAVKADSRTSLEAEAYESYMKGSLLFEQDQNWDVALKHFKSARAVYEELGKYGDLDNQVLCRERVEELEPSIRYCLHKIGQSNLQTSELLNIGDMEGPALDLFKAKLEAAMAEARSQQAASMTEFHWLGHRFPISNAKTRVAILKAQELEKDIHGPLAENISADKRLVIFDKIFSAYHDARGYIRADLATAGSAESVKDDLNGLDKAVSAVLGERTIERNLLLVKIAKSKLAKRIDDKNEKVTKPEELVRLYDLLLQNTSDLSDLVSSGRDQKSEEVSFAEECSFKSLAFRAERCFYVAKSYSVAGKRAEAYALYCRARNLAEDALKKLQTLDGINKTVMKELEILCNEARSNSCIEHALGIMEEKRTQEKISEGISNISLTGAERLEKFLLEKLDVYESAVGDSNVKSTPRIAPFPPAFQAIARNPIVLDLAYNTIEFPDIEHRMKKDKRAKGGFISRIFG 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03402 603 MobiDBLite consensus disorder prediction 1 21 - -
Vifa6g03402 603 PIRSF SRP68 27 596 IPR026258 GO:0005047|GO:0005786|GO:0006614|GO:0008312|GO:0030942
Vifa6g03402 603 Pfam RNA-binding signal recognition particle 68 44 578 IPR026258 GO:0005047|GO:0005786|GO:0006614|GO:0008312|GO:0030942
Vifa6g03402 603 Gene3D - 26 222 IPR038253 GO:0003723
Vifa6g03402 603 PANTHER SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN 20 602 IPR026258 GO:0005047|GO:0005786|GO:0006614|GO:0008312|GO:0030942
Vifa6g03402 603 CDD SRP68-RBD 30 218 IPR034652 GO:0003723
Vifa6g03402 603 FunFam Signal recognition particle subunit SRP68 26 223 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03402 K03107 - gmx:100816486 1046.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03402 6 1116217746 1116231709 Vifa6g03402 6 1116217746 1116231709 ECH