Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03258 ATGCACTTCCACAACCTTCATCGCTCTCCTCCTTTCTCCTCCGGAAACGGATTCTTTCTCCTTGGTCATCATGTAAGCAGGTGGAAGCGCAGTTATAATGGACGTGAATTGGAAACAAGACTCTTCCGCAATAATCGTAGAAATAGAGGAGGTGTGAAGAAATGTTTAGGAGCGTCTATAAACTGTTCTAGCAATGCTTCAAATGGTTCTTCTCTACCGTCTATCGAGCAATTGAGTAATGCTCGAGTTATATATTCTGTTGCTCCATCCATGGGCCACAACCAGGAATCTCATCCAGAATCACATTTTAGAGTTCCTGCAATTGTGAAAGCTCTGGAAAAAATGGAACTCACTTCCAAGTTCCGTGGCTCTGAAGTCATTGAACTTCAAAATTTTGAGCCTGCTTCTGCCGATGACATTGCAAGTGTGCATGCAAGAGCCTATGTTTATGGGCTTGAAAAGTTTATGGATCAAGCTTTGGAGAAGGGCCTTATTCTCATTGAAGGTTCTGGACCAACATATGCTACTTCCACTGTTTTGCATGCTTATTGTGTTGACTCAGTGGTTGCAGCTTCAAAGATAATGAAAGATCCACCTACTGGTTTTGCTTTGATAAGACCACCAGGACATCATGCTGTTCCAAAAGGACCTATGGGATTTTGCATTTTTGGAAATGTGGCCATTGCAGCTCGCCATGCTCAGCGTGTTCATGGACTGAAGCGCGTGTTTATAATTGACTTTGATGTTCATCATGGGAATGGAACTAATGATGCTTTCTATGATGATCCAGACGTATTTTTCCTTTCCTTCCATCAGGATGGAAGCTATCCAGGTACCGGTAAATTTGATGAGGTGGGATCTGGGGATGGTGAAGGAACCACACTTAACCTGCCTCTTCCTGGAGGTTCAGGCGATACTGCTATCAGAACTGTGTTCGAAGAAGTTATTGTACCTTGCGCTCAAAGATTCAAGCCAGACATCATTCTTGTGTCTGCAGGGTATGACGGCCACGTGTTAGATGAACTAGCTAATCTTCAACTAACAACAGGAACGTATTACATGCTTGCGTCCAGTATTAAACAACTAGCAAAAGACTTATGTGGTGGTCGATGTGTATTTTTCTTGGAAGGAGGATATAATCTCAAGTCTCTTTCATACTCAGTGGCAGACACATTTCGTGCTCTTCTTGGGGACAAAAGCTTGGCAGGTGAATTTGATAACCCAAACATTTTGTATGAAGAGCCAACAAAAAAGGTTAAGCAAGCAATTCAGAGGATAAAACACCTCCATTCACTGTGA 1299 0.4265 MHFHNLHRSPPFSSGNGFFLLGHHVSRWKRSYNGRELETRLFRNNRRNRGGVKKCLGASINCSSNASNGSSLPSIEQLSNARVIYSVAPSMGHNQESHPESHFRVPAIVKALEKMELTSKFRGSEVIELQNFEPASADDIASVHARAYVYGLEKFMDQALEKGLILIEGSGPTYATSTVLHAYCVDSVVAASKIMKDPPTGFALIRPPGHHAVPKGPMGFCIFGNVAIAARHAQRVHGLKRVFIIDFDVHHGNGTNDAFYDDPDVFFLSFHQDGSYPGTGKFDEVGSGDGEGTTLNLPLPGGSGDTAIRTVFEEVIVPCAQRFKPDIILVSAGYDGHVLDELANLQLTTGTYYMLASSIKQLAKDLCGGRCVFFLEGGYNLKSLSYSVADTFRALLGDKSLAGEFDNPNILYEEPTKKVKQAIQRIKHLHSL 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03258 432 CDD HDAC_classII 98 396 - -
Vifa6g03258 432 PRINTS Histone deacetylase superfamily signature 207 230 IPR000286 -
Vifa6g03258 432 PRINTS Histone deacetylase superfamily signature 325 335 IPR000286 -
Vifa6g03258 432 PRINTS Histone deacetylase superfamily signature 241 256 IPR000286 -
Vifa6g03258 432 PANTHER HISTONE DEACETYLASE 2-RELATED 66 400 - -
Vifa6g03258 432 SUPERFAMILY Arginase/deacetylase 93 399 IPR023696 -
Vifa6g03258 432 Gene3D Histone deacetylase domain 74 431 IPR037138 -
Vifa6g03258 432 Pfam Histone deacetylase domain 98 394 IPR023801 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03258 Vifa-Chr6 1074776267 1074782469 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03258 - - gmx:100788664 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03258 6 1074776267 1074782469 Vifa6g03258 6 1074776267 1074782469 ECH