Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03217 ATGAAAGGCGGAACGGTTCAAATCAACTGGCACGAAAGCAAACCCGTCTTAACCCTAGATTTCCACCCTCTCTCCGCCACTCTCGCCACCGCCGGCGCCGATTTCGACATCAAGTTATGGTCAATTAAACCTTCTGGATCGCCGAAGAAGCTTCCAGTAGTTACTTATCTCAACAGCCTCTCGTACCATAGTTCAGCTGTTAATGTTATTCGATTCGCTCCTTCCGGGGAACTATTGGCTTCTGGTTCTGATGGTGGTGAACTGTTAATATGGAAGCTGCATTCGATGGATACTGGCCAGACATGGAAGGTTCTTAAGATGTTAAGATCCCATATAAAGGACATTATGGACCTGGAGTGGTCTTCTGATGGTGCATATATGATATCTGGATCAGTTGATAATTCTTGCATTATATGGGATGTTAACAAAGGAACTAACCTTCAGACGTTGGATACCCATGCACACTATGTTCAAGGGGTAGCATGGGACCCTTTAGGAAAGTATGTTGCTTCTTTAAGTTCTGACCGGACTTGCCGAGTTTACATTAGTAAACCCCATAAAACAAAGGGTATTGAGAGAATCAATTACGCTTGCAAGCATGTTATTTCCAAGGCAGAACAGCCATTATTAAAGAATTCCAAGTCAACAAAATATCATCTCTTCCACGACGAAACATTGCCCTCTTTCTTTAGAAGATTAGCTTGGTCTCCAGATGGTTCATTTCTACTTGTGCCTGCAGGTTCTTACAAATTTGGTACTGCGTCTGAATCTGTAAATGCAGCTTACATATTTTCCAGAAAAGATCTTTCTCGGCCTGCTATACAGATTCCTTGTGCAAGCAAAGCTGTTGTAGCTGTCCGGTTCTGTCCTATATTTTTCAATCTTAAGGGAACAAACTCAGATGGGTTATTTAAGCTCCCATATCGCATTGTATTTGCTGTTGCCACATTGAATTCATTGTACATTTATGACACTGAGAGCACTTCTCCAATAGCTGTATTTGCTGGTCTTCACTATGCTCCAGTAACAGATATTACCTGGTCACCTGATGCCCATTATTTGGCATTCTCCTCGCAAGATGGCTTCTGCTCATTGGTGGAGTTTGAAGATGGCGAACTTGGATCACCTTACTGTTTATCAAAAGGAAATGTCTCAGACAAGGATAATAAAAGCACCCTGCAGACAGCCAACAACACTGTGTTACCAACTGGGAGTGTTGGTGCAGCTGTAGCAGAAAGCAGAAAAATGGAAGCCGAAGAAAAAGTTGATGACATGGACATTGAAGCATCTAGGGATATTGGTGCATTTCCATCCGATAGTAGCAAAACTAAAAAACAAGATAATCCGGATGACATGATCATCAAGCCAACTGGGAATGCTAGTGCAGTTATAGCAGATAGTTGGAAGAGTGAAGCAGAACATAAAACTGATGACATGGTTATTGAAGGAGTTGAAGCAGAACATAAAACTGATGACACGGTCATTGAAGGAGTTGCAGCAGATAGTAGAAAACAATTACCCAATCCAGACTGTAAACTAAGTGAAGCAGATAAACCACCGTCAAGTGATGGCATAAAACCAGGGCCAGCAGAAAAGACAGGGAATCAATTGTCAAGTTCAAAGAGCACACTTGTCTCAAATAAGCCAGCCAGGAAGCGCATCACTCCTATTGCAATTGGTCCATGA 1686 0.4229 MKGGTVQINWHESKPVLTLDFHPLSATLATAGADFDIKLWSIKPSGSPKKLPVVTYLNSLSYHSSAVNVIRFAPSGELLASGSDGGELLIWKLHSMDTGQTWKVLKMLRSHIKDIMDLEWSSDGAYMISGSVDNSCIIWDVNKGTNLQTLDTHAHYVQGVAWDPLGKYVASLSSDRTCRVYISKPHKTKGIERINYACKHVISKAEQPLLKNSKSTKYHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKFGTASESVNAAYIFSRKDLSRPAIQIPCASKAVVAVRFCPIFFNLKGTNSDGLFKLPYRIVFAVATLNSLYIYDTESTSPIAVFAGLHYAPVTDITWSPDAHYLAFSSQDGFCSLVEFEDGELGSPYCLSKGNVSDKDNKSTLQTANNTVLPTGSVGAAVAESRKMEAEEKVDDMDIEASRDIGAFPSDSSKTKKQDNPDDMIIKPTGNASAVIADSWKSEAEHKTDDMVIEGVEAEHKTDDTVIEGVAADSRKQLPNPDCKLSEADKPPSSDGIKPGPAEKTGNQLSSSKSTLVSNKPARKRITPIAIGP 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03217 561 FunFam Chromatin assembly factor 1 subunit FAS2 4 250 - -
Vifa6g03217 561 Gene3D - 2 186 IPR015943 GO:0005515
Vifa6g03217 561 Gene3D - 187 395 IPR015943 GO:0005515
Vifa6g03217 561 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 144 - -
Vifa6g03217 561 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 95 - -
Vifa6g03217 561 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 560 IPR045145 GO:0006335
Vifa6g03217 561 MobiDBLite consensus disorder prediction 532 549 - -
Vifa6g03217 561 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
Vifa6g03217 561 SUPERFAMILY WD40 repeat-like 13 397 IPR036322 GO:0005515
Vifa6g03217 561 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 43 IPR001680 GO:0005515
Vifa6g03217 561 MobiDBLite consensus disorder prediction 416 430 - -
Vifa6g03217 561 SMART WD40_4 53 92 IPR001680 GO:0005515
Vifa6g03217 561 SMART WD40_4 2 41 IPR001680 GO:0005515
Vifa6g03217 561 SMART WD40_4 327 367 IPR001680 GO:0005515
Vifa6g03217 561 SMART WD40_4 101 140 IPR001680 GO:0005515
Vifa6g03217 561 SMART WD40_4 143 182 IPR001680 GO:0005515
Vifa6g03217 561 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Vifa6g03217 561 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 181 IPR001680 GO:0005515
Vifa6g03217 561 MobiDBLite consensus disorder prediction 416 459 - -
Vifa6g03217 561 Pfam WD domain, G-beta repeat 58 92 IPR001680 GO:0005515
Vifa6g03217 561 Pfam WD domain, G-beta repeat 11 41 IPR001680 GO:0005515
Vifa6g03217 561 Pfam WD domain, G-beta repeat 103 140 IPR001680 GO:0005515
Vifa6g03217 561 Pfam WD domain, G-beta repeat 144 181 IPR001680 GO:0005515
Vifa6g03217 561 MobiDBLite consensus disorder prediction 496 561 - -
Vifa6g03217 561 Coils Coil 408 428 - -
Vifa6g03217 561 PRINTS Beta G protein (transducin) signature 164 181 IPR001632 -
Vifa6g03217 561 PRINTS Beta G protein (transducin) signature 108 124 IPR001632 -
Vifa6g03217 561 PRINTS Beta G protein (transducin) signature 127 141 IPR001632 -
Vifa6g03217 561 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03217 Vifa-Chr6 1066271238 1066276481 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03217 25 181 Miscellaneous Gene Families AT5G08390 28.025 5.15e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03217 K10751 - gmx:547606 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03217 6 1066271238 1066276481 Vifa6g03217 6 1066271238 1066276481 ECH