Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03200 ATGGATTCGGAGCTGAAATCGGCCAAATACTCTTACCGGACCGCCAAGGAAGAAGGTAACCACCGTGAAGAAGCGCGTTGGGCAAACGTCATCGGCGACATACTCAAGAACAGAGGAGAATACGTCCAAGCCCTCAAATGGATCCGAATCGATTACGAAATTTCGCGTAAATACTTGCCTGATAATCAATTGCTCACAACTTGTCAATCCCTCGGCGAGATCTATCTCCGTCTCGAGCATTTTAAGGAAGCCCTAACTTACCAGAGAAAACATTTAGAGCTTGCTAGGGAAGCGAACGACCTTGTTGAGCAACAAAGAGCTAGCACACAGCTAGGTCGAACTTACTACGAGCTGTTTTCGAGATCTGAACACGATCACAACTCGGTTCGTAATGCAAAGAAGTATTTCAAGAGTGCAATGGAACTGGCGGTTTCTCTTAAAAAGAATCCGCCTAATAATAAGTCTTCATATCTCAAGGAGTACATTGATGCTTACAATAATATAGGAATGCTTGAAATGGAGATTGACAATTTGCAGGAGGCGCAGAAGATACTTAGTAAAGGATTGGAGATTTGTGACGAAGAGGAGGTTAATGAGTATGACGATGGGCGGACTAGGTTACATCATAACCTTGGGAATGTGTATATGGAATTGAGGATGTGGAATGAGGCTAGCAAGCATATTAGGAAAGATATTTTGATTTGTCACAAAATTGGACATCGTCAAGGGGAGGCCAAAGGGTATATTAATCTTGGTGAAATGCATTATAGGACTCAGAAGTACGAAGAGGCGCGATCTTATTATGAGAAGGCACTCGCTTTGGCTAAGTCATTGGAGGATGAGGATGCTTTGGTTAGACAGATTAATCAAAATATTGAAACTGTTAAAGAAGCGGTTAAAGTTATGGATGAAATCAAGGGAGAAGAGCAGAAACTTAAGAAACTCAAGAGAGGTATAGCCTCTGCCAGAGGGACACTGCACGAACGCAACTGTCTGCTTCAGCAAAACGGGTCTCTTGAATGCCTCGTTGAGAAAGCAAGGATGATCTCGGCATGGGAGAAGTATTGTGAATTTGCAAAGGAGAAGAAGAAAGTAGCACATGACCTTAGTGACAGGCAAAGGTTGGGTGATTCTTATCTTGATGTTGCAGAATCATACCAGAAGCTCAGAAAATTCAACAAGGCAATCAAATGGTACAAAAAGAGTTGGGAAGTGTACAAAACAATTGGTAACTTAGAGGGGCAAGCACTGGTGAAAATTAATATTGGTAATGTTTTGGATTCTACTCACAATTGGAAAGAAGCGTTGGATGCATATAAAGAGAGCCACAGGATTGCTGTTGAAATAAAGCTTCCTGATGTACAACTTTCTGCCTTGGAAAATATGCATTATAGCAACATGATCAGATTTGATGACGAGGATGAGACCAGGAGGCTGAAACTTCTAATTGATGAACTGAAGAAGTCAAATGAAGAGCAAGAAGATAATAGTACGCCTGAGGATTATTGTCCTGAAACTGATAATGAAGAAAATGATTGTATGTCAAATAGCGAGTCTGATGAGTTTTGCTTTCCAAAGAAAACTTATAAATCAGAAACCCTGACACATGGAGAAGAATTGAATGATGATAACGTGCCTATTATGTCGCTATATCAGTCCATTGAAGGTTCATCTAGAAAGATAAGTCACAAGGGAAGTCCTGCCAACTCTACCATGCAGGTTGACCAGTCACCCAAAAGTGTGACAAAACAAACAAGCAAGCATGAAGCAGTTGTTGGTCGTAAACGTGTCCGTGTAATTCTTTCCGATGATGATGATGATGATGATGATGATGATGATGATGAGATGGAATGCTCAAGCAGAAAGGATCGTGACTGCCTTTTAGAGAACTTGCCCAATTGTGATGCAACTGAGAGTAAAATCAGTCCTAGTAAAATTCAGGTTCTCCCGGAGAATAGATCTAAATGTGCAATTGATGTTGAAGAAAGTAGTAGTTCTTTCAAAAGCCGGAGTACAAATACAGCCACTAAATCATGCAGACATTCCAGATCATTTAGCAATGATTTAGCTGTCGAACCTGAGTTTCACAGTGGTTCTAAATGCGATACAGTTGTCTCTGGCAAACAAAATGGTGTTGCCCATCCCATGACACATCATTCTGAAGATGATAAATATATTCCATGTCGGATTGGGAATGATATAATTTATGTTGAAGCAGCCTTGTGCGCTGCCGGTGATCATTTCAACATAGACTCGTTAAAAGCTGCAGTTGCATGCCTATACTATCTACAATTTCCAACAGAAAAGAGATCAGAGGGTTTGTTGCCCATTATTAAGCACGTAAAATGTGGTGGAAGAGATATAGAATTGCTGGAAAGTGTTGAAAAGCTTAAGGAGCATCTGCAAAACAACATGGTTGAAGCTTTCATTGATGGATGGATTCAGAAGTGCCTAATAAGAATGTACGTAGACCGCTGCAAGGAGTTGAGTGAGGAACCAAAGATCAAGGTGCTGAAGAAACTTTACAATTTAGAGGTATCAGATGATGAAATCATTGTGTCGGACTGTGATCTGCAAGATTTGTCTATAACACCATTGATAGATGCACTGCATTCCCAAATGACTTTTTCTTTACTTGATATCTCTCACAATTGCTTAGGAAATGGGACAATCGAGAAACTTCGAAAAGTGTTCACAACATCAGGTCAATCTTACGGTGACTTAACTCTGGATTTGCACTGCAATCGATTTGGCCCAACAGCTTTGTTTCAGATTTGTGAATGCTCTCTGCTATTTGCTCGCCTTGAAGTGCTTAACATTTCTGGAAATCGTCTTACTGATGCCTGTGGATCTTATCTTTCAACAATCTTAAAAAACTGTACAGCTCTTTGTAGCTTGAATGTAGAGAACTGCTGTATCACATCCAGAACCATTCAAAAAATTGCTGATGCATTGGACTCTAGATCTGTACTTTCACACCTTTGTATAGGACACAACAGCCCTGTATCTGGGAATGCTTTAGTTAATCTTCTATCCAAGCTTTCTACTTTAAAAAGGTTTTCGGAGTTGAATATGAGTGGTCTAAAACTAAGCAAACTGGTTGTCGATAGCCTTTGCCAGCTCGCAGGGACCTTGACTTTATCAGGACTAGTACTTGGAGGCACTGGTATTGGAAACGAAGGGGCTACGAAAGTAACAGAACCATTGCTAAAAGGGACCGAGGAGCTTGTGAAACTTGATCTATCATATTGTGGGCTAACATCTGATTATATTTTAAACATGAATGTTAATTCATTTTGTTCTATCCTTGAGCTGAACCTGGAAGGAAATCCCATAATGCTCGAGGGCTGCAATACTCTATTTTCGCTTCTCATAAACCCACAGTGCTGTCTCAAAGTTTTGGTCCTTAGGAAGTGTCAACTTGGGCTTGCTGGAGTTCTTCACATACTTGAGGCTCTTGAAGATAACAGTAGCCTGGAGGAGCTTAATCTTGCTGATAATTCTGTTCAAACGGAACTTTATCTTCTACAATGTGATGTATCAGCTAAAAGCTGCTCACAGAACCAGGAGCAGAAAGTATCATCTAAAAGCTGCTCACAGAACAAGGAGCAGAAACTTGATACTGTGAAAGTGGATGATAATCAAGAGGTGTTATGTCCTCTAAATACTTTTGCCGATCAGCTGGAAGTTGCTGATAGTGAAGAAAGGGCTGAAGCTGCTGCTTCTGGAATTGACGACAGCTGTGCTAGTTCATGTCAAAGAATTTCATCTCCCGAGTGCCATTTCACTCAACAGTTTTTAACTGCTATTGCAAAGGCAAAGAACTTACAATTACTAGACCTTAGCAATAATAGTTTTTCTGCACAAACTTCAGAAACATTCTACGGTTCGTGGACAACTTTACGACCCCTTTCAAGTCACAGGCACATAACAAAGCACATTGTTCATTTCTCAACTAAGGAAAAGAAGTGCTGCAGCGTGAAACCATGCTGTAAGAAAGTTTGA 4005 0.4055 MDSELKSAKYSYRTAKEEGNHREEARWANVIGDILKNRGEYVQALKWIRIDYEISRKYLPDNQLLTTCQSLGEIYLRLEHFKEALTYQRKHLELAREANDLVEQQRASTQLGRTYYELFSRSEHDHNSVRNAKKYFKSAMELAVSLKKNPPNNKSSYLKEYIDAYNNIGMLEMEIDNLQEAQKILSKGLEICDEEEVNEYDDGRTRLHHNLGNVYMELRMWNEASKHIRKDILICHKIGHRQGEAKGYINLGEMHYRTQKYEEARSYYEKALALAKSLEDEDALVRQINQNIETVKEAVKVMDEIKGEEQKLKKLKRGIASARGTLHERNCLLQQNGSLECLVEKARMISAWEKYCEFAKEKKKVAHDLSDRQRLGDSYLDVAESYQKLRKFNKAIKWYKKSWEVYKTIGNLEGQALVKINIGNVLDSTHNWKEALDAYKESHRIAVEIKLPDVQLSALENMHYSNMIRFDDEDETRRLKLLIDELKKSNEEQEDNSTPEDYCPETDNEENDCMSNSESDEFCFPKKTYKSETLTHGEELNDDNVPIMSLYQSIEGSSRKISHKGSPANSTMQVDQSPKSVTKQTSKHEAVVGRKRVRVILSDDDDDDDDDDDDEMECSSRKDRDCLLENLPNCDATESKISPSKIQVLPENRSKCAIDVEESSSSFKSRSTNTATKSCRHSRSFSNDLAVEPEFHSGSKCDTVVSGKQNGVAHPMTHHSEDDKYIPCRIGNDIIYVEAALCAAGDHFNIDSLKAAVACLYYLQFPTEKRSEGLLPIIKHVKCGGRDIELLESVEKLKEHLQNNMVEAFIDGWIQKCLIRMYVDRCKELSEEPKIKVLKKLYNLEVSDDEIIVSDCDLQDLSITPLIDALHSQMTFSLLDISHNCLGNGTIEKLRKVFTTSGQSYGDLTLDLHCNRFGPTALFQICECSLLFARLEVLNISGNRLTDACGSYLSTILKNCTALCSLNVENCCITSRTIQKIADALDSRSVLSHLCIGHNSPVSGNALVNLLSKLSTLKRFSELNMSGLKLSKLVVDSLCQLAGTLTLSGLVLGGTGIGNEGATKVTEPLLKGTEELVKLDLSYCGLTSDYILNMNVNSFCSILELNLEGNPIMLEGCNTLFSLLINPQCCLKVLVLRKCQLGLAGVLHILEALEDNSSLEELNLADNSVQTELYLLQCDVSAKSCSQNQEQKVSSKSCSQNKEQKLDTVKVDDNQEVLCPLNTFADQLEVADSEERAEAAASGIDDSCASSCQRISSPECHFTQQFLTAIAKAKNLQLLDLSNNSFSAQTSETFYGSWTTLRPLSSHRHITKHIVHFSTKEKKCCSVKPCCKKV 1334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03200 1334 Gene3D Tetratricopeptide repeat domain 312 468 IPR011990 GO:0005515
Vifa6g03200 1334 ProSiteProfiles TPR repeat region circular profile. 245 274 - -
Vifa6g03200 1334 SUPERFAMILY RNI-like 844 1299 - -
Vifa6g03200 1334 Coils Coil 261 325 - -
Vifa6g03200 1334 Gene3D Ribonuclease Inhibitor 825 1220 IPR032675 -
Vifa6g03200 1334 SMART tpr_5 162 195 IPR019734 GO:0005515
Vifa6g03200 1334 SMART tpr_5 205 238 IPR019734 GO:0005515
Vifa6g03200 1334 SMART tpr_5 25 58 IPR019734 GO:0005515
Vifa6g03200 1334 SMART tpr_5 65 98 IPR019734 GO:0005515
Vifa6g03200 1334 SMART tpr_5 245 278 IPR019734 GO:0005515
Vifa6g03200 1334 SMART tpr_5 376 409 IPR019734 GO:0005515
Vifa6g03200 1334 SMART tpr_5 416 449 IPR019734 GO:0005515
Vifa6g03200 1334 MobiDBLite consensus disorder prediction 588 602 - -
Vifa6g03200 1334 SMART LRR_RI_2 932 959 - -
Vifa6g03200 1334 SMART LRR_RI_2 960 987 - -
Vifa6g03200 1334 SMART LRR_RI_2 1128 1155 - -
Vifa6g03200 1334 SMART LRR_RI_2 1099 1126 - -
Vifa6g03200 1334 SMART LRR_RI_2 873 900 - -
Vifa6g03200 1334 SMART LRR_RI_2 1044 1071 - -
Vifa6g03200 1334 MobiDBLite consensus disorder prediction 556 587 - -
Vifa6g03200 1334 SUPERFAMILY TPR-like 16 196 IPR011990 GO:0005515
Vifa6g03200 1334 Pfam Tetratricopeptide repeat 379 446 - -
Vifa6g03200 1334 Pfam Tetratricopeptide repeat 207 277 - -
Vifa6g03200 1334 SUPERFAMILY TPR-like 368 498 IPR011990 GO:0005515
Vifa6g03200 1334 Pfam Tetratricopeptide repeat 67 100 IPR019734 GO:0005515
Vifa6g03200 1334 Gene3D Tetratricopeptide repeat domain 2 157 IPR011990 GO:0005515
Vifa6g03200 1334 ProSiteProfiles TPR repeat profile. 245 278 IPR019734 GO:0005515
Vifa6g03200 1334 FunFam Protein TONSOKU 1 154 - -
Vifa6g03200 1334 Gene3D Tetratricopeptide repeat domain 158 311 IPR011990 GO:0005515
Vifa6g03200 1334 MobiDBLite consensus disorder prediction 488 518 - -
Vifa6g03200 1334 PANTHER PROTEIN TONSOKU 2 1333 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Vifa6g03200 1334 MobiDBLite consensus disorder prediction 496 516 - -
Vifa6g03200 1334 MobiDBLite consensus disorder prediction 556 620 - -
Vifa6g03200 1334 Coils Coil 476 496 - -
Vifa6g03200 1334 SUPERFAMILY TPR-like 155 283 IPR011990 GO:0005515
Vifa6g03200 1334 FunFam Protein TONSOKU 825 1197 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03200 - - aprc:113856161 1979.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03200 6 1055516596 1055529148 Vifa6g03200 6 1055516596 1055529148 ECH