Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02977 ATGCAGTTGCAGGGAGAGAAGTGGAGATCAACCATGTCAAGGGTTGTTATTTCAATATTGTTAGTTATATTTATGGTGGCAAGTCCTGTCACTGAAGCAAGGAAGTGTAGTTTCCCAGCCATATTCAACTTTGGAGATTCAAATTCGGACACAGGCGGTCTAACTGCTGCTTTCGGACAAGCTCCTCCGCCTAACGGAATAACTTTTTTTCACACGCCAGCCGGACGCTTCTCCGATGGTCGTCTTATCATTGATTTCATAGCACAAAACCTGGGGTTGCCTTATTTGAGTGCCTACTTGGACTCAATTGGTTCAAATTTCAGCAGTGGAGCCAATTTTGCAACAGCAGGATCAACCATCAGACCTCAAAATACAACCAGATCTCAAAGTGGATACAGTCCCATTTCTCTAGATGTTCAACTTGCAGAATACTCTGAATTCAAAACAAGATCCATAAAAATCCGCAAAAAAGAAGGAGTGTTTAAGAAGTTGTTGCCCAAGGAGGAGTATTTTTCTGAGGCATTATACACTTTTGATATTGGCCAAAACGATATCACTGCTGGCTACAAACTCAACATGACTACAGCTCAAGTCAAAGCCTATGTACCTGATGTATTAGGCCAATTCTCTAGTGTCATAAGGAGTGTGTATAAGGAAGGTGGAAGGTCGTTTTGGGTACACAACACAGGCCCATTGGGCTGTCTCCCATACATGCTGGATCGATCTCTGATGAGCTCGGCTCAAATGGATGATTTCGGGTGTTCCAAACAGTTCAACGAAATAGCTCAATATTTTAACCAACAACTGAAAGAAGCTGTTGTGAAATTGAGGGAAGAGCTTCAAGAGGTTACAATTGTGTATGTTGATGTGTACACCGTGAAGTACAACCTCATTAGCCATGCCCAAAAATACGGTTTTGAGAAGGGTGTGATTGCATGCTGTGGAAAAGGTGGGAAGTACAATTTCAATAATGTAGTAAGATGCGGAGCTACGACGATTGTGAATGGGAAAAAGATATTGATAGCTAAATCTTGCAAGGATCCAAGTGTGAGGATTATTTGGGATGGGATTCATTACACTGAAGCTGCTAATAACTGGATATTCCAACAAATAGTTAATGGAAACTTTTCAGATCCACCTATCTCTTTAAAAATGGCTTGCCATGACCAATTATGA 1176 0.4133 MQLQGEKWRSTMSRVVISILLVIFMVASPVTEARKCSFPAIFNFGDSNSDTGGLTAAFGQAPPPNGITFFHTPAGRFSDGRLIIDFIAQNLGLPYLSAYLDSIGSNFSSGANFATAGSTIRPQNTTRSQSGYSPISLDVQLAEYSEFKTRSIKIRKKEGVFKKLLPKEEYFSEALYTFDIGQNDITAGYKLNMTTAQVKAYVPDVLGQFSSVIRSVYKEGGRSFWVHNTGPLGCLPYMLDRSLMSSAQMDDFGCSKQFNEIAQYFNQQLKEAVVKLREELQEVTIVYVDVYTVKYNLISHAQKYGFEKGVIACCGKGGKYNFNNVVRCGATTIVNGKKILIAKSCKDPSVRIIWDGIHYTEAANNWIFQQIVNGNFSDPPISLKMACHDQL 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02977 391 Coils Coil 266 286 - -
Vifa6g02977 391 CDD SGNH_plant_lipase_like 39 375 IPR035669 -
Vifa6g02977 391 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 19 381 - -
Vifa6g02977 391 FunFam GDSL esterase/lipase At1g09390 29 376 - -
Vifa6g02977 391 Pfam GDSL-like Lipase/Acylhydrolase 41 371 IPR001087 GO:0016788
Vifa6g02977 391 Gene3D SGNH hydrolase 29 375 IPR036514 -
Vifa6g02977 391 SUPERFAMILY SGNH hydrolase 171 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02977 Vifa-Chr6 983991587 983993214 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02977 28 388 Acyl Lipid Metabolism Gene Families AT4G10950 27.467 2.10e-33 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02977 - - var:108335696 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g02977 6 983991587 983993214 Vifa6g02977 6 983991587 983993214 ECH