Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02698 ATGGCTTCCTGTGCACACTTTTCCTGTCTCGCCGCAGCTCGCATCCAGGTTCCTTCTCCGGACAGATTCCACTGCCAGAAAGTCTTCGCAGTTCGTTGTTCATCTGACTCCGGTTTTGATCCCAAGGTGTTCCGAAAGAATCTCACCAGGGGTGAGAATTATAACCGCAAAGGCTTTGGACACAAGGAAGAGACACTCAAACTAATGAAACACGAGTACACCAGTGACATCATTGAGACATTGAAAGAAAATGAGTATGAGTATACATGGGGCAATGTCACTGTTATGCTAGCAGAAGCCTTTGGCTTTTGTTGGGGAGTTGACAAGGCTGTTCAAATTGCTTATGAGGCCACAAAACAGTTTCCTAATCACAAAATTTGGATTACCAATGAAATCATTCACAATCCAACTGTTAATAAGCGGCTAGAGGAGATGGGTGTGGAGAATATTCCTATAAGAGGAGGAAAAAAACAATTTGAGGTTGTCAACAAGGGTGATGTTGTCATCTTGCCTGCTTTTGGAGCCGCGGTCGATGAGATGTTGATTTTGAGTGAGAAGAATGTTCAAATCGTTGATACAACTTGCCATTGGGTTTCAAAGGTATGGAATGTTATTGAGAAGCACAAAAAAGGAGATTATACTTCAATAATCCATGGTAAATATGCCCATGAGGAAACTGTAGCAACTGCTTCTTTTGCTGGAAAGTATATAATTGTGAAAACTATGGCAGAGGCTGAATATGTTTGCGATTATATTCTCGGCGGTGAACTTAATGGATCCAGCTCAACCAGAGAGGCACTATACGAGAAATTTAAATTTGCACTTTCTAAGGACTTTGATCCAGACAATGACCTGATAAAACTTGGCATTGCAAATCAGACAACAATGCTCAAGGGAGAGACTGAAGAGATTGGGAAACTAATAGAGGGAACTATGATGCGCAAATTTGGCGTGGAAAACGTTAATGAGCACTTCATAAGCTACAACACAATTTGTAATGCTACTCAGGAGAGACAAGATGCTATTTACAAGCTGGTAGAGAAAGATATGGATCTTATGTTAGTAGTTGGTGGCTGGAACTCGAGCAATACATCGCACCTGCAAGAGATAGCTGAGGAACGCGGAATTCCTTCTTACTGGATTGACAGTGAGCAAAGAATTGGTCCAGGAAACCGAATAGAACACAAGTTGAATCATGGCGAGCTTGTGGAGAAAGCAAACTTTCTACCAAAGGGTCCGTTAAGGATTGGTGTAACATCTGGTGCATCCACACCAGATAAGGTTGTGGGAGATGCGCTTATCAAGTTGTTTGACTTGAAAAGGGAAGAAGGGTTACATCTCGCGTAA 1347 0.4209 MASCAHFSCLAAARIQVPSPDRFHCQKVFAVRCSSDSGFDPKVFRKNLTRGENYNRKGFGHKEETLKLMKHEYTSDIIETLKENEYEYTWGNVTVMLAEAFGFCWGVDKAVQIAYEATKQFPNHKIWITNEIIHNPTVNKRLEEMGVENIPIRGGKKQFEVVNKGDVVILPAFGAAVDEMLILSEKNVQIVDTTCHWVSKVWNVIEKHKKGDYTSIIHGKYAHEETVATASFAGKYIIVKTMAEAEYVCDYILGGELNGSSSTREALYEKFKFALSKDFDPDNDLIKLGIANQTTMLKGETEEIGKLIEGTMMRKFGVENVNEHFISYNTICNATQERQDAIYKLVEKDMDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRIEHKLNHGELVEKANFLPKGPLRIGVTSGASTPDKVVGDALIKLFDLKREEGLHLA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02698 448 Pfam LytB protein 95 432 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Vifa6g02698 448 PANTHER 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC 33 445 - -
Vifa6g02698 448 CDD lytB_ispH 95 436 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Vifa6g02698 448 Gene3D - 195 328 - -
Vifa6g02698 448 Gene3D - 329 446 - -
Vifa6g02698 448 NCBIfam 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 95 435 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Vifa6g02698 448 Hamap 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 93 440 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Vifa6g02698 448 Gene3D - 104 194 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02698 K03527 - gmx:100818067 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g02698 6 921454255 921456443 Vifa6g02698 6 921454255 921456443 ECH