Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02693 ATGAGGTCTCGAATAGTGAGAGATGCAGTTGTATACCGTGACCATGTTCAAGCAATCAAATCTGGTTTTGCATCAACTGTTTTCACTTGTAATCAACTCATTCACCACTATTATAACCATGGTCTCTTGCAAGATGCCCACAAATTGTTCGACGAAATGCCCCACCGAAATGTATACTCTTGGAATGCCCTTATTATGGCTTACATAAAAGCACACCACTTGACACAAGCACGACTCATTTTTGATTCAGCCCCTCATAGAGATTTGGTTTCATATAACTCCATGTTGTCAGCTTATGTTGGTGCTGACGGACAAGAGATCGAGGCACTTGATTTGTTTAATAGAATGCAATCTGCACGTGACACAGTTGGGATTGACGAGTTCACTCTCACAACCATGCTTAATCTTGCTTCCAAGCTACATGTAGTGTGTTATGGGAAGCAGATGCATTCACATATGGTGAAAACTGCAAATGATTTAAGCAAGTTTGCGTTGAGTTCTCTCATTAACATGTATTCTAAATGTGGTTTGTTTCTTGACGCGTGCAATGTGCTTAGTGGTTGTTCTGAGGTGGTGGACGTGGTTTCGAAGAATGCAACAGTTGCTGCTTGTTGTAGGGAAGGAAAGATGGACATGGCTTTAAATGTCTTTTGGAGAAATTTTGAGGTTAATGATACTGTGTCATGGAATACATTGATTGCAGGATATGCCCAGAATGGCTATATGGATAAAACACTCGACTTGTTCGTTGAGATGACTGAAAGAGGTATTAGGTATGATGAACATACATTAGCAAGTGTATTAAGCGCCTGCTCTGGCCTAAAATATTTGAAACTTGGCAAGTGCATCCATGCGTGGGTGTTGAAAAATGACTTCTGTACAAATCAATTCATTAGCAGCGGCATCGTAGATTTATACTGTAAGTGTGGGAATATTAGGTATGCGGAGTCGGTGTATGAAGGAATTGGTATTAAAAGCCAATTTGAAGTTGCTTCACTGATTGTAGGCTATTCATCTCAAGGCAACATGACAAAAGCCCAAAGGCTTTTTGATACTCTATTGGAAAGAAATTATGTTGTCTGGACAGCTCTATGTTCCGGCTATGCCAAATCTCAACAATGTGAGGAAGTCTTCAAACTTTTCAGAGAGTTTATAACTACTCAAGCTCTAATTCCTGATGCAATGATCATCGTCACTGTGCTTGGTGCCTGTGCAACACAAGCCGCCCTTTGTTTGGGAAAGCAGATTCATACTTACATCTTAAGAATTAGACTTAATGTGGATAAAAAAATGTTGAGTGCCATGGTTGATATGTACTCAAAATGTGGTAATATCATGTACGCCGAGAAGAGCTTCCAACTAATGACTGATAAGGATAGAGATGCAATCTTATATAATGTCATGATAGCTGGTTATGCTCATCATGGTTTTGAAAATAAAGCTATTCAACTTTTTCGGGACATGTTAAAGAAAAGTGTCGAGCCAGATGCAGTCACTTTTGTAGCGCTTCTATCTGCTTGTCGGCACCGTGGACTAGTAGAACAAGGAGAGAATTTGTTTATTTCTATGCAAGAAGATTACAATTTGTTTCCCGAGATATACCACTATGCTTGTATGGTTGATATGTATGGAAGGGCTAATCAACTAGAAAAGGCAGTAGAATTCATGAGGAAGATTCCCATACAAATAGATGCAACAATTTGGGGAGCATTTCTTAATGCTTGTCAGATAAACAATAATACATCCCTTGTCAACCTGGTAGAAGAGAAACTGTTAAAAGTTGAGTCTCATGATGGGTCTCGGTATGTGCAATTGGCCAATGTCTATGCTACTGAGGGAAAGTGGGGTGAGATGGGAAGAATAAGGAAGAAAATGAGAGTGAAGGAGGCAAAAAAGATTGCTGGTTGCAGTTGGATATATGTGGAAAACGGTATTCATGCATTTACTTCTGGTGATAAAACTCATGCCAAAGCAGATGCAATATATTCAACTTTGTTCTGCTTGAATAGGGACAGAACTGAAGCAATTTCATGA 2034 0.3943 MRSRIVRDAVVYRDHVQAIKSGFASTVFTCNQLIHHYYNHGLLQDAHKLFDEMPHRNVYSWNALIMAYIKAHHLTQARLIFDSAPHRDLVSYNSMLSAYVGADGQEIEALDLFNRMQSARDTVGIDEFTLTTMLNLASKLHVVCYGKQMHSHMVKTANDLSKFALSSLINMYSKCGLFLDACNVLSGCSEVVDVVSKNATVAACCREGKMDMALNVFWRNFEVNDTVSWNTLIAGYAQNGYMDKTLDLFVEMTERGIRYDEHTLASVLSACSGLKYLKLGKCIHAWVLKNDFCTNQFISSGIVDLYCKCGNIRYAESVYEGIGIKSQFEVASLIVGYSSQGNMTKAQRLFDTLLERNYVVWTALCSGYAKSQQCEEVFKLFREFITTQALIPDAMIIVTVLGACATQAALCLGKQIHTYILRIRLNVDKKMLSAMVDMYSKCGNIMYAEKSFQLMTDKDRDAILYNVMIAGYAHHGFENKAIQLFRDMLKKSVEPDAVTFVALLSACRHRGLVEQGENLFISMQEDYNLFPEIYHYACMVDMYGRANQLEKAVEFMRKIPIQIDATIWGAFLNACQINNNTSLVNLVEEKLLKVESHDGSRYVQLANVYATEGKWGEMGRIRKKMRVKEAKKIAGCSWIYVENGIHAFTSGDKTHAKADAIYSTLFCLNRDRTEAIS 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02693 677 Pfam PPR repeat 166 185 IPR002885 -
Vifa6g02693 677 Pfam PPR repeat 198 217 IPR002885 -
Vifa6g02693 677 Pfam PPR repeat 359 384 IPR002885 -
Vifa6g02693 677 Pfam PPR repeat 433 458 IPR002885 -
Vifa6g02693 677 Pfam PPR repeat 59 82 IPR002885 -
Vifa6g02693 677 Pfam PPR repeat 332 357 IPR002885 -
Vifa6g02693 677 Pfam PPR repeat 28 57 IPR002885 -
Vifa6g02693 677 Pfam PPR repeat 90 118 IPR002885 -
Vifa6g02693 677 Pfam PPR repeat 535 558 IPR002885 -
Vifa6g02693 677 Pfam E motif 589 639 IPR046848 -
Vifa6g02693 677 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 15 71 IPR046960 GO:0003723|GO:0009451
Vifa6g02693 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Vifa6g02693 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 88 119 IPR002885 -
Vifa6g02693 677 FunFam Pentatricopeptide repeat-containing protein At3g49710 7 144 - -
Vifa6g02693 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Vifa6g02693 677 Pfam PPR repeat family 461 507 IPR002885 -
Vifa6g02693 677 Pfam PPR repeat family 225 271 IPR002885 -
Vifa6g02693 677 NCBIfam pentatricopeptide repeat 28 58 IPR002885 -
Vifa6g02693 677 NCBIfam pentatricopeptide repeat 227 260 IPR002885 -
Vifa6g02693 677 NCBIfam pentatricopeptide repeat 464 497 IPR002885 -
Vifa6g02693 677 Gene3D Tetratricopeptide repeat domain 13 143 IPR011990 GO:0005515
Vifa6g02693 677 Gene3D Tetratricopeptide repeat domain 278 412 IPR011990 GO:0005515
Vifa6g02693 677 Gene3D Tetratricopeptide repeat domain 145 277 IPR011990 GO:0005515
Vifa6g02693 677 Gene3D Tetratricopeptide repeat domain 415 512 IPR011990 GO:0005515
Vifa6g02693 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 26 60 IPR002885 -
Vifa6g02693 677 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 430 658 - -
Vifa6g02693 677 Gene3D Tetratricopeptide repeat domain 513 660 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02693 Vifa-Chr6 920282892 920284925 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02693 43 665 Glycoside Hydrolase AT3G49170 29.440 1.09e-91 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02693 - - gmx:100803987 1067.76