Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02295 ATGGATTATCAGTATAGTCTTGGAGGGTTTCTTGCTTGTATTTTAGCATTTGTGTTTGTTTTGTATAGTTTTGCAGGAAAGAATAAGAAGGTAAAAGAAAGAGGTTCAAGTTCAATAGATGTGAAAAGTAGTGGATATGCAAAAACATCATCAGAAAATGGAATATGCTCACAAGAGGTTGAAGGAGAAACTGATATTATTGTTGTAGGTGCTGGTGTTGCTGGTGCTGCTCTTGCTTATACTCTTGGAAAGGATGGACGGCGAGTACATGTGATTGAAAGAGACTTGAGTGAACCAGATAGGATTGTGGGTGAATTGCTACAACCTGGTGGCTATCTAAAGTTACATGAGTTAGGTCTTCAAGATTGTGTGGATGAGATTGATGCACAAAGAGTCTTTGGTTATGCTCTTTATAAGGATGGGAAACACACCAGGTTGTCTTATCCATTAGAAAAATTTAACTCTGATGTATCTGGAAGAAGCTTTCACAATGGTCGTTTCATACAAAGAATGCGAGAAAAGGCTTCATCTCTTCCAAATGTAAAATTAGAACAAGGAACTGTCACATCTTTACTAGACGAAAACGGAACCATCAAAGGGGTAAACTTTAAAAACAAGAGTGGACAAGAGTTTACAACAAAGGCTCCTCTTACCATAGTATGTGATGGTTGTTTTTCAAACTTGAGACGCGCTCTTTGTAATCCTAAGGTTGAAGTTCCTTCTCATTTTGTTGGATTGGTATTGGAGAATTGTAACCTTCCATATGAAAATCATGGACATGTTATCTTAGGCGATCCTTCACCAATTTTGTTTTATCCTATAAGTAGTACCGAGATTCGATGTTTGGTCGATGTGCCTGGCCAAAAACTACCTTCTGTTGGTAATGGTGGAATGGCTCATTATTTGAAAACTGTGGTAGCACCTCAGGTTCCTCCAGAGTTATATACTTCTTTTATAGCAGCAGTTGATAAAGGAAACATCAGAAGCATGCCGAATAGAAGCATGCCTGCCGCACCTTATCCTACACCCGGGGCTCTTTTGATGGGAGATGCCTTCAATATGCGCCACCCTTTGACAGGAGGTGGAATGACGGTTGCTTTGTCCGACATTGTCGTGCTAAGGAATCTACTCAAACCTCTACATAATCTGCATGATTCTTCTGCTCTTTGCAACTACCTTGAATCATTCTACACACTAAGAAAGCCGGTGGCATCTACAATAAACACATTAGCAGGTGCATTGTACAAAGTGTTTTGTGCATCTCCTGATCCAGCTAGCATAGAAATGCGCCAAGCATGTTTTGATTATTTGAGCCTTGGAGGTGTTTTCTCAAACGGACCAATAGCTTTACTCTCTGGTCTGAATCCTCGGCCGCTGAGCTTGGTTCTCCATTTCTTCGCGGTGGCTATATATGGAGTCGGCCGCCTGTTGATTCCGTTTCCATCCCCGAACCGAATGTGGATCGGAGCTAGACTAATTTCAGGTGCATCAGGTATAATATTTCCTATTATTAAGGCAGAAGGAGTAAGACAAATGTTTTTCCCAGCAAGTGTGCCAGCATATTACAGAACTCCTCCTGTCCATTAA 1587 0.4089 MDYQYSLGGFLACILAFVFVLYSFAGKNKKVKERGSSSIDVKSSGYAKTSSENGICSQEVEGETDIIVVGAGVAGAALAYTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLHELGLQDCVDEIDAQRVFGYALYKDGKHTRLSYPLEKFNSDVSGRSFHNGRFIQRMREKASSLPNVKLEQGTVTSLLDENGTIKGVNFKNKSGQEFTTKAPLTIVCDGCFSNLRRALCNPKVEVPSHFVGLVLENCNLPYENHGHVILGDPSPILFYPISSTEIRCLVDVPGQKLPSVGNGGMAHYLKTVVAPQVPPELYTSFIAAVDKGNIRSMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHNLHDSSALCNYLESFYTLRKPVASTINTLAGALYKVFCASPDPASIEMRQACFDYLSLGGVFSNGPIALLSGLNPRPLSLVLHFFAVAIYGVGRLLIPFPSPNRMWIGARLISGASGIIFPIIKAEGVRQMFFPASVPAYYRTPPVH 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02295 528 PANTHER SQUALENE MONOOXYGENASE 8 526 IPR040125 GO:0004506|GO:0016126
Vifa6g02295 528 SUPERFAMILY FAD/NAD(P)-binding domain 63 439 IPR036188 -
Vifa6g02295 528 FunFam Squalene monooxygenase 2 58 438 - -
Vifa6g02295 528 Gene3D - 58 434 IPR036188 -
Vifa6g02295 528 Pfam NAD(P)-binding Rossmann-like domain 68 94 - -
Vifa6g02295 528 Pfam Squalene epoxidase 214 487 IPR013698 GO:0004506|GO:0016020|GO:0050660
Vifa6g02295 528 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 342 357 - -
Vifa6g02295 528 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 357 373 - -
Vifa6g02295 528 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 65 87 - -
Vifa6g02295 528 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 214 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02295 Vifa-Chr6 802450209 802452689 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02295 57 526 Miscellaneous Gene Families AT1G58440 80.508 0.0 798
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02295 K00511 - gmx:100800329 923.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g02295 6 802450209 802452689 Vifa6g02295 6 802450209 802452689 ECH