LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa6g02294	ATGGAAGCACACGCAGGAGCCAACCAGAGGATTGCAACAATCTCTGCTCATCTCCACCCTTCAAATTTCCAGGAAGGAGGTGATGCTGCTATTAACAAAGCTAACTGCAGAGCAAAAGGTGGAGCACCTGGATTCAAAGTAGCAATCTTGGGGGCTGCTGGTGGAATTGGTCAACCCCTTGCTTTGTTGCTGAAGATGAATCCATTGGTTTCAGTTCTTCATCTTTATGATGTTGTCAACACTCCTGGTGTCACTGCTGATGTTAGTCACATGGACACTGGTGCTGTGGTCCGTGGCTTCCTAGGGCAGCCACAACTTGAAAATGCACTCTCAGGAGTGGACTTGGTAGTTATACCTGCTGGTGTGCCGAGGAAACCTGGAATGACGAGGGACGATTTATTTAAGATAAATGCTGGAATTGTGAGGACACTCTGTGAAGGAATTGCCAAAAGCTGTCCCAATGCGATTGTCAACTTGATTAGCAATCCAGTGAATTCCACTGTGCCAATTGCTGCTGAGGTCTTCAAAAAAGCTGGTACATATGATCCAAAAAGACTTTTAGGAGTTACAACCCTTGATGTTGTGAGGGCAAATACTTTTGTGGCAGAGGTACTTGGAGTTGATCCAAGAGAGGTTGATGTTCCAGTGGTAGGAGGTCACGCAGGAGTCACAATATTGCCTCTTTTGTCACAGGTTAAGCCTCCTAGTAGCTTCAGTGCTGAAGAAGCCGAATACCTGACAAATCGCATTCAAAATGGTGGAACAGAAGTTGTTGAGGCAAAAGCTGGTGCTGGTTCTGCAACACTATCAATGGCATATGCGGCTGCCAAGTTTGCTAACTCATGCCTCCATGGCTTGAAAGGAGAAGCTGGGGTGGTGGAGTGTGCTTTTGTGGATTCGCAGGTTACGGATCTTCCTTTCTTTGCAACCAAGGTTCGTCTTGGTCGCGGTGGAGCAGAAGAGATATATCAACTCGGTCCCCTGAATGAGTATGAGAGGATCGGGTTGGAAAAAGCGAAGAGAGAGTTAGCAGGAAGCATCCAGAAGGGAGTAGAATTCATCAAAAAATAA	1071	0.465	MEAHAGANQRIATISAHLHPSNFQEGGDAAINKANCRAKGGAPGFKVAILGAAGGIGQPLALLLKMNPLVSVLHLYDVVNTPGVTADVSHMDTGAVVRGFLGQPQLENALSGVDLVVIPAGVPRKPGMTRDDLFKINAGIVRTLCEGIAKSCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEVLGVDPREVDVPVVGGHAGVTILPLLSQVKPPSSFSAEEAEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFANSCLHGLKGEAGVVECAFVDSQVTDLPFFATKVRLGRGGAEEIYQLGPLNEYERIGLEKAKRELAGSIQKGVEFIKK	356

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa6g02294	356	PANTHER	MALATE AND LACTATE DEHYDROGENASE	30	356	-	-
	Vifa6g02294	356	FunFam	Malate dehydrogenase	190	356	-	-
	Vifa6g02294	356	ProSitePatterns	Malate dehydrogenase active site signature.	189	201	IPR001252	GO:0006108\|GO:0016615
	Vifa6g02294	356	Pfam	lactate/malate dehydrogenase, alpha/beta C-terminal domain	190	354	IPR022383	GO:0016616
	Vifa6g02294	356	SUPERFAMILY	LDH C-terminal domain-like	189	355	IPR015955	GO:0003824\|GO:0016616
	Vifa6g02294	356	PIRSF	Lac_mal_DH	44	354	IPR001557	GO:0016616\|GO:0019752
	Vifa6g02294	356	NCBIfam	malate dehydrogenase	46	355	IPR010097	GO:0006099\|GO:0030060
	Vifa6g02294	356	CDD	MDH_glyoxysomal_mitochondrial	45	354	IPR010097	GO:0006099\|GO:0030060
	Vifa6g02294	356	Gene3D	-	37	189	-	-
	Vifa6g02294	356	Gene3D	-	190	356	IPR015955	GO:0003824\|GO:0016616
	Vifa6g02294	356	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	45	188	IPR036291	-
	Vifa6g02294	356	FunFam	Malate dehydrogenase	43	189	-	-
	Vifa6g02294	356	Pfam	lactate/malate dehydrogenase, NAD binding domain	46	188	IPR001236	GO:0016491

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa6g02294	Vifa-Chr6	801320520	801322616	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa6g02294	K00026		-	gmx:100170735	646.351

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa6g02294	6	801320520	801322616	Vifa6g02294	6	801320520	801322616	ECH