Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02291 ATGGCTTCATCGGAGATCGAAGTCGTATCCACGGAGTCCAAACCCCAAGACCACCAGCTACCTCCCATACTAGACGTCTTCACTGCCTCTTCTCATGGCGACTTTCAGAAATTGAGATTTTTCGTTGAACAAGACGCTGCGTCAGTTTCTGTTCCCGATGTTAATGGCTATTATGCTCTTCAATGGGCTTCTCTCAATAACTTCCATGAAATTGCTCACTATCTCATTCAGCATGGTGGTGATGTCAATGCTAAAGACAACATGCAACAAACTGCTTTACATTGGGCAGCAGTTCGTGGTTCAGTTGCAGCTGCTGATGTGCTCTTGGAGAATGGTGCTCGGGTTGAAGCTGCTGATATCAATGGATACCGGGCAGTTCATGTTGCTGCACAGTATGGACAAACAGCTTTCTTAAATCACGTTGTTGTAAAATACCATGCTGATTTTGATGTGCCCGATAATGATGGAAGGAGCCCTCTACATTGGGCTGCATATAAGGGATATGCTGATACAATAAGATTGCTTCTATTTAGAGATGCGAGTCAAGGAAGACAAGATAAAGATGGTTGTACCCCGTTGCATTGGGCAGCATTGAGAGGACATTCAGAGGCATGTGCTGTGCTTGTGCATGCTGGAACAAAGGAAGAATTGATGGTGAAGGACAATGCAGGATTCACTCCTGTACAACTTGCATATGATAAAGGTCATCGACATGTCGCCCCTTTCCTTTCTAATCAACAACAGGCTCATAGTAGTCACTGGAGAGGGAAGCTTTATTGTGGGATGGTGACAGATATTGGTTATGCTCCTATTTTACTGTGTATTATAGTTTCTCTCTCGATCCTCTTCACCAATTCAGTTGTTGCAGCTCCTAACCTTAAAAAGATTACAGCTGTTGTTGGATTTTGGTCATGGATAGCTCTCTCTTCATCTGTTGGTTCCTTGATTATGTTTTATAGGTGTAGTAGACGAGATCCAGGTTATATAAAACGACCAGGAGACTTGGGTACTCTGAGCGATTCAGAGGATCCCTTGTTGAATATTGAGCTGAACAGTTCCTCTGTTTGGATGGGAAACTGGTCGCAACTTTGCCCTACCTGCAAGATAATAAGACCTGTCCGATCTAAGCATTGCCCTACTTGTAAGCGTTGCGTGGAGCAGTTCGACCACCATTGTCCGTGGATATCTAATTGTGTTGGGAAGAGGAACAAAAGGGATTTCTTTATTTTAATCTGCTTGGGAACTATAACGTCTTCCGTCAGTGCCGCCGTCGCAGTTCATAGAATTTGGACATCCTTACCAGCATTACCAGCAGCAGGAGAAACATGGATTCATCAGGTGTTAGTAAGAAATCCAGGTCTTGTTGTATTTTTGGTGATGGACGCCGTTGTCGTCGTTGCAGCTACAACTTTGACAGTAACACAGGCTTCCATGATAGCACGGAATGTGACCACAAACGAACTAGCAAATTCCATACGTTATGATTATCTTCGTGGTCCTGATGGGCAGTTCAGAAATCCATATAATCATGGTTGGTGGAAGAACTGTGTTGATTTTCTTTTTCTGGGCCACACAGATGATGATGATATTGCCTGGCCTCCATTACAGCAGGTGGCTATATAA 1623 0.4387 MASSEIEVVSTESKPQDHQLPPILDVFTASSHGDFQKLRFFVEQDAASVSVPDVNGYYALQWASLNNFHEIAHYLIQHGGDVNAKDNMQQTALHWAAVRGSVAAADVLLENGARVEAADINGYRAVHVAAQYGQTAFLNHVVVKYHADFDVPDNDGRSPLHWAAYKGYADTIRLLLFRDASQGRQDKDGCTPLHWAALRGHSEACAVLVHAGTKEELMVKDNAGFTPVQLAYDKGHRHVAPFLSNQQQAHSSHWRGKLYCGMVTDIGYAPILLCIIVSLSILFTNSVVAAPNLKKITAVVGFWSWIALSSSVGSLIMFYRCSRRDPGYIKRPGDLGTLSDSEDPLLNIELNSSSVWMGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKRNKRDFFILICLGTITSSVSAAVAVHRIWTSLPALPAAGETWIHQVLVRNPGLVVFLVMDAVVVVAATTLTVTQASMIARNVTTNELANSIRYDYLRGPDGQFRNPYNHGWWKNCVDFLFLGHTDDDDIAWPPLQQVAI 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02291 540 ProSiteProfiles Ankyrin repeat region circular profile. 155 181 - -
Vifa6g02291 540 ProSiteProfiles Ankyrin repeat region circular profile. 88 119 - -
Vifa6g02291 540 ProSiteProfiles Ankyrin repeat profile. 121 154 IPR002110 GO:0005515
Vifa6g02291 540 SMART ANK_2a 188 217 IPR002110 GO:0005515
Vifa6g02291 540 SMART ANK_2a 155 184 IPR002110 GO:0005515
Vifa6g02291 540 SMART ANK_2a 223 252 IPR002110 GO:0005515
Vifa6g02291 540 SMART ANK_2a 88 117 IPR002110 GO:0005515
Vifa6g02291 540 SMART ANK_2a 121 151 IPR002110 GO:0005515
Vifa6g02291 540 SMART ANK_2a 55 84 IPR002110 GO:0005515
Vifa6g02291 540 FunFam S-acyltransferase 10 141 - -
Vifa6g02291 540 Pfam Ankyrin repeats (3 copies) 29 118 IPR002110 GO:0005515
Vifa6g02291 540 Pfam Ankyrin repeats (3 copies) 119 184 IPR002110 GO:0005515
Vifa6g02291 540 ProSiteProfiles DHHC domain profile. 362 412 - -
Vifa6g02291 540 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 7 521 - -
Vifa6g02291 540 FunFam S-acyltransferase 142 250 - -
Vifa6g02291 540 ProSiteProfiles Ankyrin repeat profile. 88 120 IPR002110 GO:0005515
Vifa6g02291 540 ProSiteProfiles Ankyrin repeat region circular profile. 188 212 - -
Vifa6g02291 540 Pfam DHHC palmitoyltransferase 362 490 IPR001594 GO:0016409
Vifa6g02291 540 Gene3D - 142 255 IPR036770 -
Vifa6g02291 540 ProSiteProfiles Ankyrin repeat profile. 188 220 IPR002110 GO:0005515
Vifa6g02291 540 Gene3D - 8 141 IPR036770 -
Vifa6g02291 540 ProSiteProfiles Ankyrin repeat profile. 155 187 IPR002110 GO:0005515
Vifa6g02291 540 Pfam Ankyrin repeat 188 221 IPR002110 GO:0005515
Vifa6g02291 540 SUPERFAMILY Ankyrin repeat 27 245 IPR036770 -
Vifa6g02291 540 ProSiteProfiles Ankyrin repeat profile. 55 87 IPR002110 GO:0005515
Vifa6g02291 540 ProSiteProfiles Ankyrin repeat region circular profile. 55 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02291 Vifa-Chr6 800584487 800594113 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02291 42 236 Miscellaneous Gene Families AT1G05640 27.861 5.96e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02291 K20032 - gmx:100798740 935.636
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g02291 6 800584487 800594113 Vifa6g02291 6 800584487 800594113 ECH