Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02222 ATGGATGAAGAGTATGATGTAATCGTCCTCGGCACCGGCCTCAAGGAATGTATCCTCAGCGGCCTCCTCTCCGTCGATGGCCTCAAAGTTTTGCACATGGATCGAAATGACTACTATGGAGGAGCTTCAACTTCTCTTAATCTTACGCAGCTGTTTAAGCGATATCGGGGAGATGATAAGCCACCAGAGAGTTTGGGCTCCAGCAGAGAATACAATGTTGACATGATACCGAAATTTATGATGGCCAATGGAGCTTTGGTTCGCGTGCTCATCCACACAGATGTTACAAAGTATTTGAATTTCAAAGCTGTAGATGGAAGCTTTGTGTATAATAAGGGAAAGATTTACAAAGTCCCAGCAACAGATGTTGAAGCACTGAAGTCACCTTTGATGGGTCTCTTTGAGAAACGCCGAGCTAGGAAGTTCTTTATTTATGTCCAAGATTATGAAGCGAATGATCCCAAATCTCACGAAGGACTTGATTTAAACCAAGTTACAGCAAGACAGCTGATTTCGAAATATGGATTGGAAGATGATACAGTTGACTTTATTGGTCATGCTTTGGCACTACATCTTGATGACAATTACTTGGATAAGCCAGCCAAGGATTTTGTGGATAGAGTTAAGGTTTATGCAGAATCACTCGCGCGCTTTCAAGGAGGTTCACCTTACATATATCCACTATATGGACTTGGAGAGTTGCCTCAGGCATTTGCGCGTTTGAGTGCTGTGTATGGCGGAACCTACATGCTGAACAAGCCAGAATGCAAGGTTGAGTTTGACAGTGCTGGGAAAGCCATCGGCGTGACTTCAGAAGGAGAAACAGCAAAATGCAAGAAAGTTGTGTGTGATCCATCTTATCTGTCTGATAAGGTTCAGAATGTTGGAAAAGTTGCGCGTGCAATCTGTATTATGAGCCACCCTATTCCAGACACTAATGATTCTCACTCAGCACAAGTCATTCTGCCACAAAAGCAACTTGGTCGTAAATCGGACATGTATCTTTTCTGCTGCTCCTATGCTCACAATGTTGCTCCAAAAGGAAAATATATTGCTTTTGTTACGACAGAAGCAGAAACTGACCAACCTCAGGTTGAATTGAAGCCTGGAATTGATCTTCTTGGACCAGTAGATGAGATTTTCTATGACATCTATGACAGATATGAACCCACCAATGATCATGCTACTGATGGTTGCTTCATCTCTACCAGCTATGATGCTACCACACACTTTGAAACCACCGTAAAAGATGTGGTTGAGATGTACAGTAAGATCACAGGAAAGGTTCTTGATCTTTCTGTTGACCTGAGTGCTGCAAGTGCCACAGCTGAAGAATAA 1338 0.4283 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGASTSLNLTQLFKRYRGDDKPPESLGSSREYNVDMIPKFMMANGALVRVLIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQDYEANDPKSHEGLDLNQVTARQLISKYGLEDDTVDFIGHALALHLDDNYLDKPAKDFVDRVKVYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDSAGKAIGVTSEGETAKCKKVVCDPSYLSDKVQNVGKVARAICIMSHPIPDTNDSHSAQVILPQKQLGRKSDMYLFCCSYAHNVAPKGKYIAFVTTEAETDQPQVELKPGIDLLGPVDEIFYDIYDRYEPTNDHATDGCFISTSYDATTHFETTVKDVVEMYSKITGKVLDLSVDLSAASATAEE 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02222 445 Pfam GDP dissociation inhibitor 1 433 IPR018203 GO:0005092|GO:0007264
Vifa6g02222 445 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 118 223 - -
Vifa6g02222 445 PRINTS Rab GDI protein signature 402 422 IPR000806 GO:0005093|GO:0015031
Vifa6g02222 445 PRINTS Rab GDI protein signature 125 140 IPR000806 GO:0005093|GO:0015031
Vifa6g02222 445 PRINTS Rab GDI protein signature 182 196 IPR000806 GO:0005093|GO:0015031
Vifa6g02222 445 PRINTS Rab GDI protein signature 16 28 IPR000806 GO:0005093|GO:0015031
Vifa6g02222 445 PRINTS Rab GDI protein signature 348 366 IPR000806 GO:0005093|GO:0015031
Vifa6g02222 445 PRINTS Rab GDI protein signature 280 294 IPR000806 GO:0005093|GO:0015031
Vifa6g02222 445 PRINTS Rab GDI protein signature 323 339 IPR000806 GO:0005093|GO:0015031
Vifa6g02222 445 PRINTS Rab GDI protein signature 75 88 IPR000806 GO:0005093|GO:0015031
Vifa6g02222 445 PRINTS Rab GDI protein signature 381 400 IPR000806 GO:0005093|GO:0015031
Vifa6g02222 445 SUPERFAMILY FAD/NAD(P)-binding domain 1 355 IPR036188 -
Vifa6g02222 445 FunFam Guanosine nucleotide diphosphate dissociation inhibitor 297 387 - -
Vifa6g02222 445 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 57 387 - -
Vifa6g02222 445 Gene3D - 2 429 IPR036188 -
Vifa6g02222 445 PANTHER RAB GDP-DISSOCIATION INHIBITOR 1 438 IPR018203 GO:0005092|GO:0007264
Vifa6g02222 445 PRINTS Rab GDI/REP protein family signature 212 229 IPR018203 GO:0005092|GO:0007264
Vifa6g02222 445 PRINTS Rab GDI/REP protein family signature 135 150 IPR018203 GO:0005092|GO:0007264
Vifa6g02222 445 PRINTS Rab GDI/REP protein family signature 24 41 IPR018203 GO:0005092|GO:0007264
Vifa6g02222 445 PRINTS Rab GDI/REP protein family signature 69 86 IPR018203 GO:0005092|GO:0007264
Vifa6g02222 445 PRINTS Rab GDI/REP protein family signature 86 102 IPR018203 GO:0005092|GO:0007264
Vifa6g02222 445 PRINTS Rab GDI/REP protein family signature 230 251 IPR018203 GO:0005092|GO:0007264
Vifa6g02222 445 PRINTS Rab GDI/REP protein family signature 6 24 IPR018203 GO:0005092|GO:0007264
Vifa6g02222 445 FunFam Guanosine nucleotide diphosphate dissociation inhibitor 118 223 - -
Vifa6g02222 445 SUPERFAMILY FAD/NAD(P)-binding domain 390 433 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02222 Vifa-Chr6 789015572 789018255 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02222 K17255 - gmx:100792036 858.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g02222 6 789015572 789018255 Vifa6g02222 6 789015572 789018255 ECH