Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01928 ATGGATTATGAGAGGATTCAAAAGCCACAGGGTGGTGGAGGTTTTTCCCCAGGAAAATTGAGAAGCATGCTATTGGGTGTGGAGAAGAAGAGGAAACAAGAGGAAGAGCTTGATTCTAGTTTGGCCTCAAGATCTCAACAGTCAGACATGGATGAATCTGGTGGCAGTGGTTCTGATCAATGTAAAGATGTAGATGTTGTGAGTGTCCATCCTGAATATTCATCTTCTACCGATCCAACCTGTAGCGTAGAGGCAGATAGTGGCGATCGTATGGCGAAGGCTAATGCGGGATTAGTAACTTCAAGGAATAGAATTCTAGAAGACCCTTCTTTAGATTACGATAGCGGGCATGATAATATGATCATGTCACCATCAATGTTTGAATTTCAAAAGGCCGAGCGTGCCCCACCGAGAGTACCCGTGGGGCCATTCTCTAAACCAGCACCATCTAAATGGGACGATGCGCAGAAGTGGATAGCAAGTCCGACATCAAACAGGCCAAAGACTGCACAGAGTCAAGGGCAAAATGGCAATGCAGTTCCGCGGAAGGTTGCTGGTCTTGGAAGCCGACAACCTTCGATGAAAGTTGTCGTTGAAGTTCTGGATCAAAGAGAAATTGGCTTAGATGAACCGGATACAAAGCAAATTGATGCAAATCAAACTAAGATGGAAGGCGGAGGACAGAAGTTTGTGAACTGGGAGGATGATCCTTATGCAATTGCAAATGCCTATGCGGTTAGTCTTAGCCAGCATAATTCATCGATTGCTGCCCAGAGTGCAACAACATTTGTTCCTCCTCCTTCAACAGCTCGATCTGTATCGATGAGAGATATGGGAACAGAAATGACACCTATTGCTAGCCAGGAGCCGTCGAGAACAGGTACACCAGTAGGGGCAACAACACCGATGCTCAGTCCTAATTCTTCACGGCCTTCTACGCCTACCAGAGCTGCCCCTTCATCAACTTTAATTAACGACAGTCTGAATCTTAACAAGAATGAATTGTCTGAAAAGGAGCTACAAATGAAAACTAGGCGAGAAATAATGGTCCTTGGGACGCAACTAGGTAAAATGAACATTGCTGCTTGGGCTAGCAAAGAAGAAGAGGACAAGGATGCATCCACTTCACTGAAAATCAAAAATGCCGAACAACCACCGAAGAGTGTTGTTGAAGCACGTGCAGCAGCATGGGAGGAGGCCGAGAAGGCCAAATATATGGCCAGATTTAGGCGCGAGGAGATGAAAATTCAGGCATGGGAAAATCACCAAAAAGCAAAAACGGAAGCCAAGATGAGAAAAATCGAGGTAGAGGTTGAAAGAATAAGGAGCAAGTCACATGACATGCTGATGAACAAATTAGCAGCTGCAAGGCACAGGGCGGAAGAAAAGCGAGCAGCAGCAGAAGCCGATAGAAACCATCAAGCTGCTAAAACTGAAGAACAAGCAGAATATATTAGAAGAACTGGTCATGTACCTTCTTCATATTTTTCATTTTCTTTTTGCACTTGGTGCTCTTAA 1518 0.4493 MDYERIQKPQGGGGFSPGKLRSMLLGVEKKRKQEEELDSSLASRSQQSDMDESGGSGSDQCKDVDVVSVHPEYSSSTDPTCSVEADSGDRMAKANAGLVTSRNRILEDPSLDYDSGHDNMIMSPSMFEFQKAERAPPRVPVGPFSKPAPSKWDDAQKWIASPTSNRPKTAQSQGQNGNAVPRKVAGLGSRQPSMKVVVEVLDQREIGLDEPDTKQIDANQTKMEGGGQKFVNWEDDPYAIANAYAVSLSQHNSSIAAQSATTFVPPPSTARSVSMRDMGTEMTPIASQEPSRTGTPVGATTPMLSPNSSRPSTPTRAAPSSTLINDSLNLNKNELSEKELQMKTRREIMVLGTQLGKMNIAAWASKEEEDKDASTSLKIKNAEQPPKSVVEARAAAWEEAEKAKYMARFRREEMKIQAWENHQKAKTEAKMRKIEVEVERIRSKSHDMLMNKLAAARHRAEEKRAAAEADRNHQAAKTEEQAEYIRRTGHVPSSYFSFSFCTWCS 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01928 505 PANTHER OS02G0116800 PROTEIN 93 499 - -
Vifa6g01928 505 Coils Coil 450 479 - -
Vifa6g01928 505 MobiDBLite consensus disorder prediction 461 481 - -
Vifa6g01928 505 MobiDBLite consensus disorder prediction 284 325 - -
Vifa6g01928 505 MobiDBLite consensus disorder prediction 24 39 - -
Vifa6g01928 505 MobiDBLite consensus disorder prediction 40 55 - -
Vifa6g01928 505 MobiDBLite consensus disorder prediction 159 179 - -
Vifa6g01928 505 MobiDBLite consensus disorder prediction 159 191 - -
Vifa6g01928 505 Coils Coil 424 444 - -
Vifa6g01928 505 MobiDBLite consensus disorder prediction 1 88 - -
Vifa6g01928 505 Pfam Remorin, C-terminal region 390 493 IPR005516 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01928 Vifa-Chr6 717257841 717260302 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01928 - - gmx:100787310 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01928 6 717257841 717260302 Vifa6g01928 6 717257841 717260302 ECH