Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01829 ATGGCTTTTAGAACCATCGTTGTTCCGGTTTTCGCTCTGATAACTATACTGCTAGAGATTCAGATATGCTTATCCGCGGATATTAGCAGAGCAGATTTTCCTCATGGATTTACGTTTGGCACTGCTTCTTCTGCTTTTCAGTATGAAGGAGCTGTGAAAGAAGATGGAAGGGGACCATCTATATGGGATACATTTTCTCATACTTTTGGCAAGGTAACAGATTTCAGCAACGCTGATGTTGCTGTGGATCACTACCACCGATACGAAGAAGACATACAACTCATGAAGGACTTGGGGATGGATGCCTATAGATTTTCCATTTCTTGGTCTAGGATTTTTCCCAATGGATCTGGCACGATCAATCAGGCAGGAATTGATCATTATAATAAATTCATCAATGCATTACTAGCAAAAGGAATTGAACCGTATGTGACACTATACCACTGGGACCTACCTCAAGCCTTGGATGACAAGTATAAGGGATGGCTCAGCACTGAGATCATAAAGGACTTTGCAACTTATGCTGAGACGTGCTTTCAGAAATTCGGAGACAGGGTGAAGCACTGGATCACATTTAATGAGCCACATACATTTACTACACAAGGATATGATGTCGGTTTACAAGCGCCCGGACGGTGCTCTATTCTCTTTCATTTGTTTTGTAAAGCAGGAAACTCTTCTACTGAACCTTACATTGTTGCTCACAATGTCCTACTTACTCATGCAACAGTAGCAGATATTTATAAGAAAAAGTATAAGAATATTCAAGGTGGATCACTTGGAGTAGCTTTTGATGTCATTTGGTATGAGCCTGAGTCAAACACTAAAGAAGACATTGAAGCAGCTCAGAGAGCTCAAGATTTTCAGCTAGGCTGGTTTCTCGATCCTTTGATGTTTGGAGATTATCCAAGTTCAATGAGAAGCAGAGTAGGAAGCAGGCTGCCAAAATTTTCTCCATCTGAGGCTGCTCTTGTAAAGGGTTCATTAGATTTTATAGGAATCAACCATTACACCACATTTTATGCAAGAAACAATTCTACTCATGTAATTGGAACTTTGCTCAATGATGCTATTGCAGACTCCGGTACCATTACCCTTCCATTCAACGGCACTAAAGCTATTGCAGAAAGGGCAAACTCAATATGGTTATATATTGTGCCACAAAGTATGAAAACCTTAATGAACTACATCAAACAGAAGTATGGGAATCCTCCTGTCTATATCACAGAAAGTGGAATGGATGATCCAAACAGTATATTTATCTCCCTTAAAGATGCTTTAAAGGACGAGAAACGGATTCGATATTACAGTGGCTATTTATCTTATCTACATACAGCTATCAAAGACGACGGTTGCAATGTGAAAGGATATTTTGCTTGGTCATTGCTGGATAATTGGGAATGGGTAGCTGGATATTCTTCAAGATTTGGTCTTTATTTTGTTGACTACAAAGACAACTTGAAGAGATACCCTAAACAATCTGTCCAATGGTTCCAGAACTTTCTGAAACCTAAACCAGCTAAATAG 1527 0.3955 MAFRTIVVPVFALITILLEIQICLSADISRADFPHGFTFGTASSAFQYEGAVKEDGRGPSIWDTFSHTFGKVTDFSNADVAVDHYHRYEEDIQLMKDLGMDAYRFSISWSRIFPNGSGTINQAGIDHYNKFINALLAKGIEPYVTLYHWDLPQALDDKYKGWLSTEIIKDFATYAETCFQKFGDRVKHWITFNEPHTFTTQGYDVGLQAPGRCSILFHLFCKAGNSSTEPYIVAHNVLLTHATVADIYKKKYKNIQGGSLGVAFDVIWYEPESNTKEDIEAAQRAQDFQLGWFLDPLMFGDYPSSMRSRVGSRLPKFSPSEAALVKGSLDFIGINHYTTFYARNNSTHVIGTLLNDAIADSGTITLPFNGTKAIAERANSIWLYIVPQSMKTLMNYIKQKYGNPPVYITESGMDDPNSIFISLKDALKDEKRIRYYSGYLSYLHTAIKDDGCNVKGYFAWSLLDNWEWVAGYSSRFGLYFVDYKDNLKRYPKQSVQWFQNFLKPKPAK 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01829 508 SUPERFAMILY (Trans)glycosidases 27 503 IPR017853 -
Vifa6g01829 508 Pfam Glycosyl hydrolase family 1 31 503 IPR001360 GO:0004553|GO:0005975
Vifa6g01829 508 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 37 51 IPR033132 -
Vifa6g01829 508 PANTHER GLYCOSYL HYDROLASE 32 505 IPR001360 GO:0004553|GO:0005975
Vifa6g01829 508 Gene3D Glycosidases 20 503 - -
Vifa6g01829 508 FunFam Beta-glucosidase 12 18 504 - -
Vifa6g01829 508 PRINTS Glycosyl hydrolase family 1 signature 328 342 IPR001360 GO:0004553|GO:0005975
Vifa6g01829 508 PRINTS Glycosyl hydrolase family 1 signature 451 468 IPR001360 GO:0004553|GO:0005975
Vifa6g01829 508 PRINTS Glycosyl hydrolase family 1 signature 406 414 IPR001360 GO:0004553|GO:0005975
Vifa6g01829 508 PRINTS Glycosyl hydrolase family 1 signature 475 487 IPR001360 GO:0004553|GO:0005975
Vifa6g01829 508 PRINTS Glycosyl hydrolase family 1 signature 429 440 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01829 Vifa-Chr6 691003867 691007802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01829 21 502 Glycoside Hydrolase AT1G26560 79.461 0.0 839
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01829 K01188 - gmx:100789360 907.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01829 6 691003867 691007802 Vifa6g01829 6 691003867 691007802 ECH