Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01776 ATGGTATCAATGAAGGCTGAGGTCACTTGGCTACGTGATGCGCTTCGAGATCTGGAAGAGGTTGAGGAAGTCAACAAGCAGCTAGATCAAATGGGTTATAATATTGGAATCCGTTTGATTGATGAGTTTTTGGCTAAATCTAATGTCTCAAGGTGTGTTGATTTCAGAGAGACAGCTGATGTGATTGCAAAGGTTGGTTTTAAAATGTTCCTTGGTGTTACTGCATCCGTGACCAATTGGGATGCTGAAGGGACTTGTTGTAGTATTGTTTTGGAAGATAATCCTTTGGTGGACTTTGTTGAGCTTCCTGACAACTACCAAGGTATCAATGAAGGCTGA 339 0.4159 MVSMKAEVTWLRDALRDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVSRCVDFRETADVIAKVGFKMFLGVTASVTNWDAEGTCCSIVLEDNPLVDFVELPDNYQGINEG 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01776 112 CDD TRAPPC3_bet3 15 110 IPR016721 GO:0030008|GO:0048193
Vifa6g01776 112 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3 15 109 IPR016721 GO:0030008|GO:0048193
Vifa6g01776 112 Gene3D Trafficking protein particle complex subunit 3 12 111 - -
Vifa6g01776 112 Coils Coil 11 31 - -
Vifa6g01776 112 Pfam Transport protein particle (TRAPP) component 14 108 IPR007194 -
Vifa6g01776 112 SUPERFAMILY Ligand-binding domain in the NO signalling and Golgi transport 14 110 IPR024096 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01776 Vifa-Chr6 675610059 675639303 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01776 K20302 - zju:107432396 183.341