Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01771 ATGCGCGCCCCACCCGCCAGAAAACTATGCACTCTCAGCTCCTATTTCCGTTCACATTTACAAAACAATCCCCAAAACCGCGTTTCCTCTTTCAAAACAGCAATTCCATTTGAAACCCAACACCATTTCGATTCTGACTTGAACCTCTCAACCCTTAAACTCCATGGTCCCTCTCCCTCAGAGGATATGCCTGAACTGGGTGAGGCCACCACTCAGCTTTCTTCTATATTGTACACTCCTCCGGTAAAGAAGCGTGTTGGTGAGAAAGTTGATGATGAAGAAAAAGAGAAAAGCATAGTGGAAATACCACTGATACTAGACTTTGCTCATGGCGATACTTCAATTAAACGGAAGGAGGTAGCACGGGAGAGGAAACAAAAATGGATTTTCAAAGACACTGGTGGTGAACGATCTGACAGGCTAATCAAAATTTGTGCAAGAAAACTAGGAGCTACTCCTACAGTTGATATGTTTGGCCGCTTGGGTCGAGAAACAGGCCTGAAAGAGTACAATTCATTGATCAGCTTGTGCGTAAAGCAGGCTAGGGAGACTGATGATGAATACGTTGCTACTGATGAATTGGGCAAGACTTATCACCTTTTAAAATCAATGAGGGAACGCGGGCTTCAGTTAGAAGAGCAAACGTACCACCCACTTCTTCAGTATATAATTGACATGGGCTTTGTTCAAGAATTTCAACTTTTCTATGATGTTATCCAAGCTGGTAATCCCAGTTCAGTTTCACGATTGGGTTACTATGAAATGTTGCTCTGGATAAGGGTTAACAATGAAGAAATGATCCGGGATATTTGTGAATACATTACGGTCGAAGAGAGTAGAGGCACTACTTCTTTACGAGAAAGTTACTTAATGGCTCTTTGTGAAAGTGACCGCAAAACACAGATTTTGGATGTGTTGAAAAATATAGACATAACAAAGCTTACATCTGCAAAATGTATATCAAATATATTTCAATCCATGGGAAGGCTACAACTGGAATCAGATGCGGAGAATTTACTTTTGGATTTGAGGGCATGCGATTATGATGCAGATGAAATTTCGAACTTCATTGCTTGTTATGCGGTTAATATTCCAAATTTACCGCTGGAAGATATCATTTCAAAAATCGAGAGTTTGCATAATATTTTGGAAGTTCTCCCTTCATCCTCATCGTATGAAAAGCTCATTTCGTATTGCTGTGGTATGCACAAGGTAGATGCAGCTCTTGATATTGTTGATAAAATGTGTGAAGCAGGCTATATGGTGTCTACTCATATATTACAATCGATATTACAGATTTGTGAGGAAACTTATGATTATATTTTGGTCCATCGAATCTATTCCATCATCAGTCGCCATCACCACCATTTGGAGTTAAATGGTCAAATATGCAGATGTTTGATACATTTTTGTGTAAGATTAAAAGATTTTGAACGCGCATACAAGATGGTTAAGGAATTGAAGGAAATGAATTTCAAACCTACAACAGCCATGTACAATGCCATAATGGCAGGATATTTTCGTGAGAAAAACTTCATTGGTGGCTTGGCGGTCCTCAAACACATGCAACATGCCAATGTAGAACCCGATTCACAGACTTTCAGCTATTTGATTAGCAATTGTGAAACAGAAGATGATATAAATATGTATTATGAAGAACTGAAGCAATTTGACATCTACCCTACAAGACAAATTTTTATGGCCCTTATTAATGCATATGCAGCTTGTGGCGAATTGGAGAAGGCAAAACAGGTAGCTCTTGATTCACGCATACCATTAAAGTGCTTAAATGAAATTAAGAGTGTTCTTGTCTCAGCTCTTGCATCTCACGGGCAATTGTCTGAGGCACTTGCTATCTACGAGGAGATCAAGAAAGCTGGACACAATTTGGAACCAAAAGCTGTTATAACACTCATCGATGAGTTGCGTCATATAAGTGGAGAGTTGGAGGGGTTGCTTCTTCTACTGAAGGAGTTGAGTGATCTAAACTACTGGGTTGACGGTTGCTTCAGGGTTATTCAGTATTGTGTTGAGCACCGTCATTTAAGTTGTGCTGTTGATCTGTTCACGCAACTCAAGGATAACTTCGAAAGTGATGAAACAATGACAGAAGTTCTTTTCGATGCAGTGTATTCTCTAATCGCGGGATCCAAGTCCTCACGTTTGCAGTTTGGCTTAGACTTGCTTTGGGCAATCAAGGACGAGCTCGGGCTTGTTCCTTCAAGGCAGTGTCTTGATTTTCTTCTAAGTGCCTGTGCCAATTCAGGAGATTTGAATAATGCCCGTTTGATTTGGAGAGAATATGAGGTTGCTGGATTTCCTTACAATGTATTAAGTTACGTGAGGATGTATCAAGCACTTTTAGCATCAGGAGATCAAAGATCTGCCGACTTTATACTCAAGAAAATTCCAAGAGATGATGTGGAGATTTGTACTGTCATATCAGCATGTCAAAAAACTTACGTTGATAAAGTTAAATCAGTAGAAGGGGAGAAGAAGAAAAAGAATGTTAAATCAGTAGAAGGGGAGAAGAAGAAAAAGAATGTTAAATCAGTAGAAGGGGAGAAGAAGAAGAAGAATGTTAAACTAGTAGAAGGGGAGATGAAGGAAAAGAATGTTAAATCTGTGGAAGGAGAGAAAAAGAAGAAGAAGAAAAGGAAAGGAACAAAAAAGAAACAAGAGAGTGAGTCTTGA 2694 0.3946 MRAPPARKLCTLSSYFRSHLQNNPQNRVSSFKTAIPFETQHHFDSDLNLSTLKLHGPSPSEDMPELGEATTQLSSILYTPPVKKRVGEKVDDEEKEKSIVEIPLILDFAHGDTSIKRKEVARERKQKWIFKDTGGERSDRLIKICARKLGATPTVDMFGRLGRETGLKEYNSLISLCVKQARETDDEYVATDELGKTYHLLKSMRERGLQLEEQTYHPLLQYIIDMGFVQEFQLFYDVIQAGNPSSVSRLGYYEMLLWIRVNNEEMIRDICEYITVEESRGTTSLRESYLMALCESDRKTQILDVLKNIDITKLTSAKCISNIFQSMGRLQLESDAENLLLDLRACDYDADEISNFIACYAVNIPNLPLEDIISKIESLHNILEVLPSSSSYEKLISYCCGMHKVDAALDIVDKMCEAGYMVSTHILQSILQICEETYDYILVHRIYSIISRHHHHLELNGQICRCLIHFCVRLKDFERAYKMVKELKEMNFKPTTAMYNAIMAGYFREKNFIGGLAVLKHMQHANVEPDSQTFSYLISNCETEDDINMYYEELKQFDIYPTRQIFMALINAYAACGELEKAKQVALDSRIPLKCLNEIKSVLVSALASHGQLSEALAIYEEIKKAGHNLEPKAVITLIDELRHISGELEGLLLLLKELSDLNYWVDGCFRVIQYCVEHRHLSCAVDLFTQLKDNFESDETMTEVLFDAVYSLIAGSKSSRLQFGLDLLWAIKDELGLVPSRQCLDFLLSACANSGDLNNARLIWREYEVAGFPYNVLSYVRMYQALLASGDQRSADFILKKIPRDDVEICTVISACQKTYVDKVKSVEGEKKKKNVKSVEGEKKKKNVKSVEGEKKKKNVKLVEGEMKEKNVKSVEGEKKKKKKRKGTKKKQESES 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01771 897 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
Vifa6g01771 897 Gene3D Tetratricopeptide repeat domain 549 668 IPR011990 GO:0005515
Vifa6g01771 897 Gene3D Tetratricopeptide repeat domain 669 896 IPR011990 GO:0005515
Vifa6g01771 897 Gene3D Tetratricopeptide repeat domain 442 548 IPR011990 GO:0005515
Vifa6g01771 897 Gene3D Tetratricopeptide repeat domain 283 441 IPR011990 GO:0005515
Vifa6g01771 897 PANTHER OS02G0132600 PROTEIN 6 834 - -
Vifa6g01771 897 MobiDBLite consensus disorder prediction 835 877 - -
Vifa6g01771 897 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 460 494 IPR002885 -
Vifa6g01771 897 NCBIfam pentatricopeptide repeat 391 420 IPR002885 -
Vifa6g01771 897 NCBIfam pentatricopeptide repeat 498 531 IPR002885 -
Vifa6g01771 897 NCBIfam pentatricopeptide repeat 464 495 IPR002885 -
Vifa6g01771 897 MobiDBLite consensus disorder prediction 835 897 - -
Vifa6g01771 897 Pfam PPR repeat 602 627 IPR002885 -
Vifa6g01771 897 Pfam PPR repeat 566 584 IPR002885 -
Vifa6g01771 897 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Vifa6g01771 897 Pfam Pentacotripeptide-repeat region of PRORP 390 557 IPR033443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01771 Vifa-Chr6 674289931 674298474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01771 358 659 Glycosyltransferase AT1G05670 21.981 1.06e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01771 - - cam:101502375 1303.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01771 6 674289931 674298474 Vifa6g01771 6 674289931 674298474 ECH