Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01466 ATGGCCACCATTAATGGGAACACTGATGCTGCTCAACCCATCGTTGCTCCTACAAAACACCCTCTTCCTCCTCCTAAGACCGTTGATTCTAAATCTGTTCTCAAAAGGTTGCAATCTGAATTGATGTCTTTGATGATGAGTGGTGAAACTAGTATATCTGCTTTTCCTGAGGAGGACAACATATTCTTGTGGAAAGGAACTATTAAAGGAAGCAAAGATACAGTATTTGAAAACACAGACTACAAACTATCACTTTCTTTCCCAAATGATTATCCTTTTAAGCCTCCTAAAGTTAAGTTTGAAACAAACTGTTTCCATCCCAATGTTGATCTTCATGGCAATATATGTTTGGACATTCTTCAGGACAAGTGGTCTTCAGCATATGATGTAAGAACAATTCTACTATCCATTCAAAGTCTTCTTGGAGAGCCAAACATTAGTTCACCTCTAAATCCACAAGCCGCACAGCTTTGGAGCAATCAAGAAGATTACAGAAAGATGGTGGTCAAGTTATACAAATCGCGAAATGCTACTGCTTAA 540 0.3852 MATINGNTDAAQPIVAPTKHPLPPPKTVDSKSVLKRLQSELMSLMMSGETSISAFPEEDNIFLWKGTIKGSKDTVFENTDYKLSLSFPNDYPFKPPKVKFETNCFHPNVDLHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNPQAAQLWSNQEDYRKMVVKLYKSRNATA 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01466 179 SUPERFAMILY UBC-like 30 172 IPR016135 -
Vifa6g01466 179 Gene3D Ubiquitin Conjugating Enzyme 25 178 IPR016135 -
Vifa6g01466 179 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 32 178 IPR000608 -
Vifa6g01466 179 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 105 120 IPR023313 -
Vifa6g01466 179 MobiDBLite consensus disorder prediction 1 29 - -
Vifa6g01466 179 Pfam Ubiquitin-conjugating enzyme 36 169 IPR000608 -
Vifa6g01466 179 FunFam ubiquitin-conjugating enzyme E2 20 26 174 - -
Vifa6g01466 179 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 34 169 - -
Vifa6g01466 179 CDD UBCc 35 168 IPR000608 -
Vifa6g01466 179 SMART ubc_7 35 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01466 Vifa-Chr6 528398886 528400756 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01466 34 141 Miscellaneous Gene Families AT3G17000 31.356 2.46e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01466 K06688 - gmx:100305664 302.367