Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01462 ATGGTCAGAAAACATGGCTGGCAATTACCTGCTCACACTTTTCAGGTTGTTGCAATCACTGTATTCTGCTTGTTGGTGATTGCTTTCTATGCTTTCCTTGCACCGTTTGTTGGAGGTCATATATGGGAATACACCTTTATTGGTGTCTACTCTCCTGTGGCCCTCATTGTTTTCATTCTTTATGCTAGATGTACTGCAATTAACCCTGCAGATCCAGGCATTATGTCTAAATTTGACCCTAGAGTGGGAAGAGAGCATTCCTCCCTGTCATCCGCTGCTTCCAAAAGGTCTATGACTAATATGAGTAAGAAAAGTTCAGTGGAAGATCCTGGCAGAGTAGATGATTTGAGAAATCAGTATAAACCAAGCTCATGTGATGTAATTGGGGGAATTTGCTGCATATTATTTTCTCATGAAGATTGCCGAAAACAGGAAACAGCTGATGAGCAGGGCGGTGGGGAAGATGCTCTGTTCTGCACTTTGTGCAATTCTGAGGTGCGCAAGTTCAGTAAACACTGTAGAAGTTGTGATAAATGTGTTGATGGCTTCGATCACCATTGTCGGTGGCTTAACAACTGCGTGGGTCAGAAAAATTACCATTCTTTTATTTCTCTTATGGCCTTTAGTCTTACATGGCTTGTTATTGAAGCTGGAGTCGGTATCACTGTTTTAGTGCGTTTCTTTGTTAACAAGAGAGGAATGGAATCTGAAATCATTGATAGACTTGGAAATGGATTCTCTCGTCCCCCGTTTGCTGCAGTTGTGGTCGTATGTACTGCAGTGTCTGTCTTGGCTTGTGTGCCTTTGGGTGAGCTTTTCTTTTTCCACATGATCCTAATCAGGAAGGGTATCACAACATATGAGTATGTTGTAGCAATGAGAGCCATGAGCGAAGCACCTCCAGGGGCCTCTGTGGATGGGGATTTGCCAAATATACTTTACTCTCCAACAGGCTCAACGACAACTGGATTGAGTGGAGGAAGTTCTCTTGGATTGCAGTACAAAGGGGCGTGGTGTACCCCTCCTAGGGTATTTGTCGACTATCAGGATGAAGTTGTGCCTCACTTGGAGCCCGGAATGCTGCCATCAACTGTTGATCCGGATGCAGCTGGGTTTGCAGAAAGAGGGCAAAAGTTGCCAAAAAGGCCTGTTCGTATTAGTGCTTGGAAGCTTGCTAAATTGGATTCTCAAGAGGCAGCGAGAGCAGCTGCTAAAGCCAGGGCATCTTCTTCAGTTTTGCGACCTGTAGATAGCCACCGCCCACCTGATGCAGAATTAAGTTCTAGTGGAAACATGAGTATCAGAAGTAGTATGAGTATAGATACTGGAATCAATAAGGAAGTAAAACACGAGTTAAGATTGTCTCCAGTGAGGAATTTGATGGCTCCTAGTCAAGGAAGCCGTGACGAGTATGAAACTGGAACTCAAAGTATGAGTAGTTTCAGTAGTCCAAGCCATGCTCAAGAGGCAGTTACACTCAGCCCTCTTCCTCAGGGGCGTACTTTGGGTGGCTTCCGGGCCGGTATTTCAGTTCCTAGTTTGGTGCCTGAGCGTCCTTTAACTTCTAAATCAACATTGCAAAACTTCAGGAACCCAATATCCAATCCGTCTCATGGATTCGATGGAACAATGATGCTGAAGGGAGCAAGTAACGACCCGTTACTGCTTTCAGCTTCCAATACGTCCATTCTAAGAGACGTTAAACGGACATCAGTTGTTTGGGATCAAGAAGCCGGCAGATATATCTCAGTTCCTTCATTACCTTCAGAAGCTCGAAATAGGTCATTTCTGCAAATAGAAATGCCAAATTCAGATACTGAAACAAGCAGTAATGGAAGGAAACCAGTGATACCTCCGCAAGAACTGGCGTCATCTGCACCTAAATCTCCAAGGCAGCATGCACAGAATCTGACTTATACAGGAGAGTCTATCTTTTTTGGTGGTCCATTTTTGAGTGTGGCTGCTAAAGATGGTTTGAAAAATGAAAAACATTTGGGATCAGTAGAGGCCCATGATAGCGTAGCAGTAAGCTTGCCCCAAGAGCCAAGATATAGAAGAGATTCACACTCAAATCAACTTCCAGTGTTTGTTCCTGGTGGTTTTGATAATGCTCTTCAACCTCGGTCTGGCATGAATTAG 2139 0.4423 MVRKHGWQLPAHTFQVVAITVFCLLVIAFYAFLAPFVGGHIWEYTFIGVYSPVALIVFILYARCTAINPADPGIMSKFDPRVGREHSSLSSAASKRSMTNMSKKSSVEDPGRVDDLRNQYKPSSCDVIGGICCILFSHEDCRKQETADEQGGGEDALFCTLCNSEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGQKNYHSFISLMAFSLTWLVIEAGVGITVLVRFFVNKRGMESEIIDRLGNGFSRPPFAAVVVVCTAVSVLACVPLGELFFFHMILIRKGITTYEYVVAMRAMSEAPPGASVDGDLPNILYSPTGSTTTGLSGGSSLGLQYKGAWCTPPRVFVDYQDEVVPHLEPGMLPSTVDPDAAGFAERGQKLPKRPVRISAWKLAKLDSQEAARAAAKARASSSVLRPVDSHRPPDAELSSSGNMSIRSSMSIDTGINKEVKHELRLSPVRNLMAPSQGSRDEYETGTQSMSSFSSPSHAQEAVTLSPLPQGRTLGGFRAGISVPSLVPERPLTSKSTLQNFRNPISNPSHGFDGTMMLKGASNDPLLLSASNTSILRDVKRTSVVWDQEAGRYISVPSLPSEARNRSFLQIEMPNSDTETSSNGRKPVIPPQELASSAPKSPRQHAQNLTYTGESIFFGGPFLSVAAKDGLKNEKHLGSVEAHDSVAVSLPQEPRYRRDSHSNQLPVFVPGGFDNALQPRSGMN 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01462 712 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 22 293 - -
Vifa6g01462 712 MobiDBLite consensus disorder prediction 602 633 - -
Vifa6g01462 712 MobiDBLite consensus disorder prediction 684 712 - -
Vifa6g01462 712 ProSiteProfiles DHHC domain profile. 157 207 - -
Vifa6g01462 712 MobiDBLite consensus disorder prediction 87 106 - -
Vifa6g01462 712 MobiDBLite consensus disorder prediction 457 491 - -
Vifa6g01462 712 MobiDBLite consensus disorder prediction 460 491 - -
Vifa6g01462 712 MobiDBLite consensus disorder prediction 406 436 - -
Vifa6g01462 712 Pfam DHHC palmitoyltransferase 156 291 IPR001594 GO:0016409
Vifa6g01462 712 MobiDBLite consensus disorder prediction 87 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01462 Vifa-Chr6 526469214 526482187 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01462 158 288 Lipid Metabolism Gene Families AT4G22750 29.008 3.02e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01462 K20027 - gmx:100805779 1177.93