Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01461 ATGAAATTGAGCGATATTCAAGCTTGTGGAAATGGAAACCCGAGGGTTTCTGCTTTAGTATGTGCAGCAGTTCCCAAATGCTTTCAGGATAATCTACTTCAGGCTCCCTTATGGTCTAGGTCAAGTAGTACAGAATCTTCTTCGGCAACGGATAATTCAACTGCTGATGTGAAACCCAACCAAGGGTTCAAGGGCCATGATATGCTTGCCCCTTTCACAGCTGGATGGCAGGCTACTGATTTGAATCCTTTGGTTATTGAAAAATCTGAGGGATGCTATGTGTATGACATTAATGGGAAAAAATATCTTGACGCACTTGCTAGTCTATGGTGCACTGCTTTAGGGGGAAGCGAGAAACGCCTTGTTGATGCTGCCACTGCACAATTAAACAAATTGCCATTTTACCATTCCTTCTGGAATCGAACCACAAAACCTTCACTGGATCTAGCCAAGGAACTCCTAGAATTTTTTACAGCCAGGAAAATGGGTAAAGCTTTTTTTGTTAATAGTGGATCAGAAGCCAATGACACTCAGGTTAAAATTGTATGGTATTATTACAATGCACTTGGAAGACCAAATAAGAAAAAATTCATAGCTCGGACTAAAGCGTATCATGGTTCAACATTAATAGCAGCCAGTCTTTCTGGTCTTCCAGCTATGCATAACAATTTTGATCTGCCAGCTCCTTTTGTCTTGCATACTGATTGTCCACACTACTGGCGTCATCATCTTCCAGGTGAGACTGAGGAAGAGTTTTCAACCAGATTGGCCAACAATTTGGAGGAGCTAATTTTGAAAGAGGGACCGGAGACAATTGCTGCATTTATTGCAGAGCCAGTGATGGGTGCTGGAGGTGTAATACTTCCACCAGCAACTTATTTTGATAAGGTCCAAGCTGTTGTCAAGAAGTATGATATCCTTTTTATTGCAGATGAGGTGATATGTGCCTTTGGGAGGCTCGGGTCAATGTTTGGATGCGACAAATATAGCATTAAGCCAGACCTTGTCTCCTTGGCAAAGGCACTTTCTTCGGCATATATGCCAATTGGAGCAGTCTTGGTGAGCCCAGAAATCACCGAGGTTCTACATTCTCAGAGCAACAAACTTGGATCATTTTCTCACGGGTTCACTTATTCTGGATCGCCCGTACCCTGTGTTGTCGCACATGAAGCACTCAAGATCTACAAGGAAAGAAATATTGTTGACATAGTGAACAAGATATCTCCAAAGTTCCAGGATGGCCTAAAAGCTTTTTCTGATAGCCCCATCATTGGAGAAATACGGGGAACTGGCTTGATCCTGGGGACTGAGTTCACAGACAACAAATCACCTAATGATCTATTTCCTCCTGAATGGGGAATAGGTGCCTATTTCGGAGCACAATGTGAGAAACATGGCATGTTAGTTCGTGTAGCTGGAGATACTATCATGATATGTCCACCGCTTATCATCTCTCCTGAAGAAGTTGATGAGTTGATCAGCATTTATGGGAAAGCTTTACGAGATACTGAAAAGAGAGTACAGGAGCTTAAGTCTCAACGCAAGTAG 1548 0.4264 MKLSDIQACGNGNPRVSALVCAAVPKCFQDNLLQAPLWSRSSSTESSSATDNSTADVKPNQGFKGHDMLAPFTAGWQATDLNPLVIEKSEGCYVYDINGKKYLDALASLWCTALGGSEKRLVDAATAQLNKLPFYHSFWNRTTKPSLDLAKELLEFFTARKMGKAFFVNSGSEANDTQVKIVWYYYNALGRPNKKKFIARTKAYHGSTLIAASLSGLPAMHNNFDLPAPFVLHTDCPHYWRHHLPGETEEEFSTRLANNLEELILKEGPETIAAFIAEPVMGAGGVILPPATYFDKVQAVVKKYDILFIADEVICAFGRLGSMFGCDKYSIKPDLVSLAKALSSAYMPIGAVLVSPEITEVLHSQSNKLGSFSHGFTYSGSPVPCVVAHEALKIYKERNIVDIVNKISPKFQDGLKAFSDSPIIGEIRGTGLILGTEFTDNKSPNDLFPPEWGIGAYFGAQCEKHGMLVRVAGDTIMICPPLIISPEEVDELISIYGKALRDTEKRVQELKSQRK 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01461 515 SUPERFAMILY PLP-dependent transferases 69 501 IPR015424 -
Vifa6g01461 515 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 308 345 IPR005814 GO:0008483|GO:0030170
Vifa6g01461 515 PIRSF Transaminase_4ab_Lys_Orn 29 503 IPR005814 GO:0008483|GO:0030170
Vifa6g01461 515 MobiDBLite consensus disorder prediction 42 59 - -
Vifa6g01461 515 CDD OAT_like 83 500 IPR005814 GO:0008483|GO:0030170
Vifa6g01461 515 Pfam Aminotransferase class-III 83 499 IPR005814 GO:0008483|GO:0030170
Vifa6g01461 515 Gene3D - 118 400 IPR015421 GO:0003824
Vifa6g01461 515 Coils Coil 493 515 - -
Vifa6g01461 515 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 45 501 - -
Vifa6g01461 515 FunFam Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, probable 118 398 - -
Vifa6g01461 515 Gene3D Aspartate Aminotransferase, domain 1 84 500 IPR015422 GO:0003824
Vifa6g01461 515 MobiDBLite consensus disorder prediction 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01461 Vifa-Chr6 525985906 525994851 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01461 K16871 - gmx:100815181 857.825