Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01458 ATGGAAGAGATTGACCAGAAGCTAGAAGAGGATCATCCAAATGCAATGGACCACAGTGACAATGACATAGATGATGATGACACACAGATTGACGTGGAAGATGACGAAGGAGAAGAAGAAAATGCATCGGAGAATGAAGAGGAAGGGGAAGGAGAAAAAGATACGGTGGATGAAGATCAGTTCAGGTTTTGTGACGGCGTAAATCCTATAGATTTCATAAATAACAATAATTCCGGTATTCAACTGTATCAGAAATTGAAAGAGTTAGAGTACGAAGCTACGGCTAACAAAAAGCGTAAAGCAACTCAACAGTGTCCCCTAGAAGATGGTATTTCTGGAGTAAGCCCGGCTGATATGATGGAATTGATGAATTTTGGGCGAGGAAGGAGATCAAGAAAGAGGTCTAAGAAAAGAGGGAGGCAAAGAGGATCAAAGAAGAAAATTGACGAAAAGATATCACGGATGTTGGGCGATGCCAACATGCACTATGCAAATCGTCGTTATGAGATGGCTATAGCTGTATTGCATGAAGTTGTCAAGCTGGAACCAAATTTACCCGAGTCGTATCACACTCTTGGACTTGTCTATAGTGCAATGGGGGAGTCCGAAAAAGAAATGGGTTTTTACATGATTGCTGCTCATTTGACTCCCAAAGATTCATCGCATTGGAAAAAGCTCTTTGTGTGGTCTATAGAACAAGGTGATATTGGTCAAGCCAATTATTGTATTTCAAAAGCAATAAAAGCTGACCCCAAAGATAGCAGTCTTAGAAGTCATCACGCAATGCTTTATGCTGAAAGTCAAGATTATCAAAAAGCTGCCGAGGTTTATGAACAAATATATCAACTTTGGCGGGAAAATATTGATGCACTAAAAGCAGCAGCTAAGTTCTACCAAAAATGTGGTCAAGTTGAACGCTCAATTTGCATCCTCGAAGAGCATCTAAAGAGTAAACCAGATGGAGTAAATGCAAGTGTAGTTGATCTACTTGGTGCCATATTGATGGAAATTAAGGCTCATGACAGAGCTCTTCAATACATAGAACAATCTCAAATGGTCGGAAAAGAATTGCCCTTAAATTTGAAAGTCAAAGCTGGAATCTGCCATGTTCATCTTGGAAACATGGAAATGGCTCAGGTTTTCTTTAAGGATTTGAAACCAGATAATGCAAACAAGCATGTCGAGTTGATCACCGAAGTCGCAGACTCATTAATGGGTTTTGGACATTATAATTCTGCATTGGATTATTTTAAGATGATCGAAGGAAATTGTAAAAATGAAAATGGTCTTTTGTATTTGAAAAGTGCTAGATGTTATCAATCCTTGGGAGAAAGGAAACAAGCAGTTATCTTTTTTTACAAAGCCCTAGAAACACTACAAGATGATGTTGAAGCACGCATAAATTTGGCTTCACTTCTAGTTGAGGAAGGGAATGAAATTGAAGCCATTTCCTTGCTGTCTCCCCCAAAGGGTTCTGACTCTGGTGAAGCACATTCTGAAAAGTCAAATAGATGGTGGGTTGATGTGCGAATAAAAGTTAAGCTCTGTAACATATTTCATACTAGAGGGATGCTTAATGAATTTGTGGATGTAAGTTTCCCTATGGTACGCGAATCGCTGGAAGTTGCAAATCCTAGACGAAGGGGAAACTCAAATTGGAGCCTCCCCACAAGGGTTAATAGGAGCCTCCCCACAAGGGTTCTCCTTGACAGAGTAAGGGCAGTAGAGTCTCCGGAAACGGGTAATTTGTTTGGAGCATTCAGGCCCGTAGTTTCATCACATGATCTGTTGAAAGCTAACAGGGCAAAGAAGTTGCTCAAGAAAAAGGCTATTGAGAAGGAGAGAAAAAAAGCCGAGGCAGTGGCCTCTGGAGTTGACTGGTTAAGTGATGATTCAGATGATGAGCCTCAGATACCAAACACAGAACCTCCCTTGTGCAATTTTCACAAAGATGAAGAATATCACCTGCTAATCATTGATTTGTGCAACGCATTAGCGTCCTTGCAAATGTATGGGGAAGCATTGGAAATTGTCAATCGCACTCTAAGATTAGCGCATACTTTTCTGTCTGTTGAGAAAATTGAGAAACTTCGCTCTCTTGGAGTTCAAATGGCATACAAAACCACAGATCCTAAACAAGGTTTTGATTGTGTAAAACGCATTGTTTTGCAAAATGCACAGAGTTCTGCAGCTTGGAATTGCTACTACAAGGTCATATCAAGATTGGAAAACCGAGATACAAGACACGACAAACTTTTACGTAATATGCAAGGGAAATTTGTGGATTGTGTACCTCCTATCCTCATTTCCGGGCATCAGCTTACTATATGCAGCCATCATCAAGATGCAGCAAGGAAGTACCTTGAAGCTTATAAACTTTTGCCTGAGAATCCATTAGTTAATCTTTGTGTTGGAACGGCCTTGATCAACTTGGCGCTGGGTTTTAGACTTCAAAATAAGCATCAGTGTCTTGTACAAGGTTTTGCATTCCTTTACAATAATGCGAGGATCTGTGAGAACAGTCAGGAATCTTTGTTCAACATAGCTCGGGCATTCCATCATGTTGGTTTTGTAACACTGGCAGCAATATATTATGAGAAGGTGATTGCTATTAACGAAAGAGACTATCCAATTCCAAAACTCCAATATGAGAATATTCATGTCAATGAAAATGAGAAACCTGGTTACTGCAACCTTCGCAGAGAGGCAGCTTATAATCTGCATTTAATCTACAAAAGGAGTGGGGCAGTTGATCTTGCTAGGCAAGTTCTGAAAGATTATTGTTCTGTTTGA 2793 0.4006 MEEIDQKLEEDHPNAMDHSDNDIDDDDTQIDVEDDEGEEENASENEEEGEGEKDTVDEDQFRFCDGVNPIDFINNNNSGIQLYQKLKELEYEATANKKRKATQQCPLEDGISGVSPADMMELMNFGRGRRSRKRSKKRGRQRGSKKKIDEKISRMLGDANMHYANRRYEMAIAVLHEVVKLEPNLPESYHTLGLVYSAMGESEKEMGFYMIAAHLTPKDSSHWKKLFVWSIEQGDIGQANYCISKAIKADPKDSSLRSHHAMLYAESQDYQKAAEVYEQIYQLWRENIDALKAAAKFYQKCGQVERSICILEEHLKSKPDGVNASVVDLLGAILMEIKAHDRALQYIEQSQMVGKELPLNLKVKAGICHVHLGNMEMAQVFFKDLKPDNANKHVELITEVADSLMGFGHYNSALDYFKMIEGNCKNENGLLYLKSARCYQSLGERKQAVIFFYKALETLQDDVEARINLASLLVEEGNEIEAISLLSPPKGSDSGEAHSEKSNRWWVDVRIKVKLCNIFHTRGMLNEFVDVSFPMVRESLEVANPRRRGNSNWSLPTRVNRSLPTRVLLDRVRAVESPETGNLFGAFRPVVSSHDLLKANRAKKLLKKKAIEKERKKAEAVASGVDWLSDDSDDEPQIPNTEPPLCNFHKDEEYHLLIIDLCNALASLQMYGEALEIVNRTLRLAHTFLSVEKIEKLRSLGVQMAYKTTDPKQGFDCVKRIVLQNAQSSAAWNCYYKVISRLENRDTRHDKLLRNMQGKFVDCVPPILISGHQLTICSHHQDAARKYLEAYKLLPENPLVNLCVGTALINLALGFRLQNKHQCLVQGFAFLYNNARICENSQESLFNIARAFHHVGFVTLAAIYYEKVIAINERDYPIPKLQYENIHVNENEKPGYCNLRREAAYNLHLIYKRSGAVDLARQVLKDYCSV 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01458 930 SUPERFAMILY TPR-like 652 924 IPR011990 GO:0005515
Vifa6g01458 930 Gene3D Tetratricopeptide repeat domain 356 487 IPR011990 GO:0005515
Vifa6g01458 930 SUPERFAMILY TPR-like 393 733 IPR011990 GO:0005515
Vifa6g01458 930 FunFam General transcription factor 3C polypeptide 3 571 929 - -
Vifa6g01458 930 MobiDBLite consensus disorder prediction 126 147 - -
Vifa6g01458 930 Gene3D Tetratricopeptide repeat domain 582 929 IPR011990 GO:0005515
Vifa6g01458 930 Gene3D Tetratricopeptide repeat domain 151 355 IPR011990 GO:0005515
Vifa6g01458 930 ProSiteProfiles TPR repeat profile. 186 219 IPR019734 GO:0005515
Vifa6g01458 930 MobiDBLite consensus disorder prediction 1 19 - -
Vifa6g01458 930 MobiDBLite consensus disorder prediction 1 58 - -
Vifa6g01458 930 PANTHER TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED 9 929 IPR039340 GO:0006383
Vifa6g01458 930 MobiDBLite consensus disorder prediction 20 54 - -
Vifa6g01458 930 SUPERFAMILY TPR-like 158 323 IPR011990 GO:0005515
Vifa6g01458 930 SMART tpr_5 152 185 IPR019734 GO:0005515
Vifa6g01458 930 SMART tpr_5 186 219 IPR019734 GO:0005515
Vifa6g01458 930 SMART tpr_5 254 287 IPR019734 GO:0005515
Vifa6g01458 930 SMART tpr_5 429 462 IPR019734 GO:0005515
Vifa6g01458 930 SMART tpr_5 655 688 IPR019734 GO:0005515
Vifa6g01458 930 SMART tpr_5 842 875 IPR019734 GO:0005515
Vifa6g01458 930 SMART tpr_5 324 357 IPR019734 GO:0005515
Vifa6g01458 930 SUPERFAMILY TPR-like 328 420 IPR011990 GO:0005515
Vifa6g01458 930 MobiDBLite consensus disorder prediction 129 144 - -
Vifa6g01458 930 Coils Coil 596 619 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01458 K15201 - gmx:100813793 1170.22