Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01449 ATGAAGAACTTAAACATATCTTTGTGCATGGTTATGACAGTAGTACTTGTTGGCTTAGGTGGAAGTGTACCTTCTGGCTTCAACTATGGTGATGCTCTTGACAAGAGTTTGTTGTTCTTTGAAGCACAAAGATCCGGTAAATTACCAATGCAAGAGCAACGAATCAAATGGCGCGCTGATTCTGGTCTCAAGGATGGAATTCAGCAAGGAGTAGAGTTGGTGGGAGGGTACTATGATGCAGGTGATCATGTGAAGTTTGGCCTGCCAATGGCTTATAGTGTGACAATGCTGGCATGGGGAGCTATTGAGTTTAGCAAGGAAATGACAGACTTAAACCAAATCGGACATACTCTACGGGCTATTAAATGGGGAACTGATTATTTCATCAAAGCGCATACTCAACCTAATGTTCTTTGGGGACAGGTGGGTGATGGAGTTTCGGATCACTACTGCTGGGAACGTGCTGAAGACATGACGACTTCAAGAACTGCCTATAAAATTGATGAACAGCATCCTGGTTCTGATCTTGCTGGTGAAACTGCAGCTGCATTGGCAGCTGCGGCCATAGCTTTCAGGACATACAACTCTTCTTACTCCAATCTCTTGTTAGTCCATGCAAAACAGCTCTTCACGTTCGCAGATAGATACAGAGGCCTATATGATGAGTCCATATCCTGTGCTCACCAATTCTATGCTTCTTCTGGCTATTCAGATGAATTGTTATGGGCTGCTGCATGGCTGCACCAAGCGACCGGCGATGACTACTACCTAAAGTATGTCGTGGACAATGCGGTGTATATGGGTGGAACTGGATTGGCGGTGAAAGAGTTCTCTTGGGACAACAAATATGCTGGTGTCCAGATCCTCCTATCAAAGGTATTACTAGAAGGAAAAGCTGGTTCATATGCATCTACGCTAAAGCAATATCAGGCCAAAGCAGATTATTTTTCCTGCGCCTGTTTGCAAAAGAATGACGGTTACAATGTCCTGAAAACTCCAGGTGGCTTATTGTACCTGCATGAATGGAACAACATGCAGTATGCTTCCTCTGCCGCGTTTCTTTTAGCTGTTTACTCTAATTATCTATCAGCTGCAAAGGCACAGCTCAACTGTCCTGAGGGTCAAATTCAGCCTCAGGAACTTCTCAATTTTGTCAAGTCACAGGCTGATTATATCCTTGGTAAAAACCCGGAGGATATGAGCTACTTGGTTGGATATGGACCAAAATATCCTATTCATGTTCACCACAGAGGCGCTTCCATTGCTTCCGTCTTTTCTCTTCACTCTGAGGTTGGTTGCGCACAAGGATTCGACGCATGGTATAACCGTGTTCAGCCAAATCCTAATGTGATCTATGGAGGCCTTGTAGGGGGTCCAGATAGAAATGACGACTACTCTGATGACAGATCCAATTATGAACAAACTGAGCCTACGATTTCAGGTTCTGCTCCTCTTGTAGGGATTTTCGCTAAACTGCAAAGTTCATATGGTAATGTTGGTTCCTACCATAATGAATCACCATTGCCCCAGAAAAAAAATCCAAGTACAACATACCTTTCCAAAGAACTAAAACCTAAAACACCACAAGGTGCACCAGTTGAATTCCTGCACTCAATTTCCAGCTCATGGACTGTTGGTACAACAACTTATTACAGACACAAGGTGATAATCAAGAACACTTCTGTAAAGCCGGTCTCCGATCTTAAGTTGGTGATTGAGAATCTCTCAGGCTCTGCGTGGGGTCTGTCTCCAACTGGAGAGAAGAACACCTATGAACTTCCCCAGTGGCTCAAGGTCTTGAATCCCGGATCTGAGTGTATATTTGTTTATGTTCAAGGTGGACCCCAAGCAAAAATCTCGATTCAAAGCTTCCACTAA 1878 0.4398 MKNLNISLCMVMTVVLVGLGGSVPSGFNYGDALDKSLLFFEAQRSGKLPMQEQRIKWRADSGLKDGIQQGVELVGGYYDAGDHVKFGLPMAYSVTMLAWGAIEFSKEMTDLNQIGHTLRAIKWGTDYFIKAHTQPNVLWGQVGDGVSDHYCWERAEDMTTSRTAYKIDEQHPGSDLAGETAAALAAAAIAFRTYNSSYSNLLLVHAKQLFTFADRYRGLYDESISCAHQFYASSGYSDELLWAAAWLHQATGDDYYLKYVVDNAVYMGGTGLAVKEFSWDNKYAGVQILLSKVLLEGKAGSYASTLKQYQAKADYFSCACLQKNDGYNVLKTPGGLLYLHEWNNMQYASSAAFLLAVYSNYLSAAKAQLNCPEGQIQPQELLNFVKSQADYILGKNPEDMSYLVGYGPKYPIHVHHRGASIASVFSLHSEVGCAQGFDAWYNRVQPNPNVIYGGLVGGPDRNDDYSDDRSNYEQTEPTISGSAPLVGIFAKLQSSYGNVGSYHNESPLPQKKNPSTTYLSKELKPKTPQGAPVEFLHSISSSWTVGTTTYYRHKVIIKNTSVKPVSDLKLVIENLSGSAWGLSPTGEKNTYELPQWLKVLNPGSECIFVYVQGGPQAKISIQSFH 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01449 625 SUPERFAMILY Six-hairpin glycosidases 26 498 IPR008928 GO:0005975
Vifa6g01449 625 Gene3D - 26 496 IPR012341 GO:0005975
Vifa6g01449 625 Pfam Glycosyl hydrolase family 9 29 488 IPR001701 GO:0004553|GO:0005975
Vifa6g01449 625 PANTHER ENDO-1,4-BETA-GLUCANASE 20 495 - -
Vifa6g01449 625 SMART CBM49_2 533 613 IPR019028 GO:0030246
Vifa6g01449 625 Pfam Carbohydrate binding domain CBM49 534 612 IPR019028 GO:0030246
Vifa6g01449 625 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 391 417 IPR018221 -
Vifa6g01449 625 FunFam Endoglucanase 25 497 - -
Vifa6g01449 625 MobiDBLite consensus disorder prediction 458 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01449 Vifa-Chr6 523136455 523139322 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01449 27 625 Glycoside Hydrolase AT1G48930 69.667 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01449 K01179 - gmx:100812170 1056.97