Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01439 ATGGCGACTCTGCAATTCACATTCACCGATTCAACTACTCCATACAGACCGTTGTTATCTCAATTACCTTCTAAATCTATTCATTCTCGAACTCGAAGTTTCGTCGTCAAAGCTTCTTCCGAACTCTCCAGAACCAGAAGACAGTTCATCGCGGAAACCACGGCTATATCGGTGTTAGTACCTTCTCAGTTGGTGAAAGCTGAAGAAACTCTTTCTGAGTGGGAAAGAGTTTATCTACCTATCGATCCTGGTGTTGTGCTTCTGGATATTGCTTTTGTTCCGGAAGACCCTAACCATGGTTTTCTTCTGGGGACGAGGCAAACCCTTTTGGAGACTAAAGATGGAGGAAACACTTGGGCTCCGCGATCTATACCATCTGCAGAAGATGAAGATTTTAACTATAGGTTTAATTCTATCAGCTTCAAAGGGAAAGAAGGATGGATAGTGGGAAAACCTGCAATTCTGCTCTACACTTCTGATGCTGGAGAAAGTTGGGAAAGGATACCACTCAGTGCTGAGCTTCCAGGCGATATGGTATACATAAAGGCAACCGCTGACAAGGGTGCGGAGATGGTGACTGATGAAGGTGCAATATATGTTACCGCAAATAGAGGATACAATTGGAAGGCTGCTGTTCAGGAATCAGTGTCGGCTACGCTTAATAGAACAGTTTCTAGTGGTATTAGTGGTGCAAGTTATTACACTGGAACTTTCAATACTGTCAATCGATCTCCCGATGGAAGGTATGTTGCAGTCTCAAGTCGTGGCAACTTCTACTTGACCTGGGAGCCTGGACAGGCGTACTGGCAGCCACATAACAGAGCAGTTGCTAGAAGAATCCAAAACATGGGATGGAGAGCTGATGGAGGTCTGTGGCTTCTTGTCCGTGGAGGTGGTCTTTATCTCAGCAAGGGCACAGGGATAACCGAAGAATTTGAGGAAGTTCCTGTTCAAAGCCGGGGATTTGGCATTCTTGATGTTGGGTATCGTTCAACGGATGAGGCTTGGGCAGCAGGTGGGAGCGGTGTTCTCTTGAGAACTAATAACGGTGGCAAGTCATGGATCCGTGACAAAGCTGCTGACAACATTGCTGCAAACTTATACGCAGTAAAGTTCATTGATGACAAGAAGGGATTTGTATTGGGAAATGATGGAGTTTTGCTTCGCTACCTTGGATAG 1179 0.4555 MATLQFTFTDSTTPYRPLLSQLPSKSIHSRTRSFVVKASSELSRTRRQFIAETTAISVLVPSQLVKAEETLSEWERVYLPIDPGVVLLDIAFVPEDPNHGFLLGTRQTLLETKDGGNTWAPRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGESWERIPLSAELPGDMVYIKATADKGAEMVTDEGAIYVTANRGYNWKAAVQESVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQAYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGITEEFEEVPVQSRGFGILDVGYRSTDEAWAAGGSGVLLRTNNGGKSWIRDKAADNIAANLYAVKFIDDKKGFVLGNDGVLLRYLG 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01439 392 Gene3D - 72 289 IPR015943 GO:0005515
Vifa6g01439 392 PIRSF Photosystem_II_Ycf48-like 35 392 IPR016705 -
Vifa6g01439 392 Pfam Photosynthesis system II assembly factor YCF48 69 390 IPR028203 -
Vifa6g01439 392 SUPERFAMILY Oligoxyloglucan reducing end-specific cellobiohydrolase 73 391 - -
Vifa6g01439 392 PANTHER PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC 30 392 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01439 - - gmx:100810566 704.131