Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01435 ATGAGAGGCTTATCGAGAATCTCAAAATCACTGGCGACCAGTTTCTTGTTCAACCGAACAAAACCTGAACTCGCACCATGCAGAAATCGAGCATACAGTTTGATCCCAATGGTCATTGAAACCTCTTCCAGAGGTGAAAGAGCCTACGATATCTTCTCTCGTCTTCTCAAGGAACGCATCATTTGCATCAATGGACCCATCTCTGACGACACCTCTCATGTCGTTGTTGCTCAGCTTTTGTTTCTTGAATCTGAAAACCCTTCCAAGCCTATCAACATGTACCTCAATTCCCCTGGTGGTGCCGTTACTGCAGGGCTTGCAATATATGATACTATGCAGTACATTCGGTCTCCGATCAACACAATGTGTTTGGGGCAGGCAGCGTCCATGGCTTCTCTCCTGTTGAGTGCGGGTGCCAAGGGTCAGAGGCGTGCTCTTCCGAATGCTTCAATCATGATTCACCAGCCTTCTGGTGGATACAGTGGCCAGGCAGCGGATATTTTAATTCATTCCGAGCAGATTAAAAAAGTCTCGAAAGCGCTGAATGAGTTGTACGCCAAGCACACTGGCAAATCGGTTGATGTTATTAAGAAGGATATGGATAGAGATAATTTTATGGATGCTAAAGAGGCAATGGAGTATGGGATTATTGATGAGGTTATTGATCAGAGACCTATGACTTTGGTTTCTGATGCTGTTGGCGATGAAGGCAAAGATAAAGGTTCAAATTAG 732 0.4495 MRGLSRISKSLATSFLFNRTKPELAPCRNRAYSLIPMVIETSSRGERAYDIFSRLLKERIICINGPISDDTSHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSPINTMCLGQAASMASLLLSAGAKGQRRALPNASIMIHQPSGGYSGQAADILIHSEQIKKVSKALNELYAKHTGKSVDVIKKDMDRDNFMDAKEAMEYGIIDEVIDQRPMTLVSDAVGDEGKDKGSN 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01435 243 Pfam Clp protease 44 223 IPR023562 -
Vifa6g01435 243 ProSitePatterns Endopeptidase Clp histidine active site. 143 156 IPR033135 -
Vifa6g01435 243 PRINTS Clp protease catalytic subunit P signature 121 138 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vifa6g01435 243 PRINTS Clp protease catalytic subunit P signature 199 218 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vifa6g01435 243 PRINTS Clp protease catalytic subunit P signature 90 110 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vifa6g01435 243 PRINTS Clp protease catalytic subunit P signature 142 161 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vifa6g01435 243 PRINTS Clp protease catalytic subunit P signature 50 65 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vifa6g01435 243 SUPERFAMILY ClpP/crotonase 43 225 IPR029045 -
Vifa6g01435 243 ProSitePatterns Endopeptidase Clp serine active site. 121 132 IPR018215 -
Vifa6g01435 243 CDD S14_ClpP_2 50 220 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vifa6g01435 243 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 27 228 IPR023562 -
Vifa6g01435 243 FunFam ATP-dependent Clp protease proteolytic subunit 33 225 - -
Vifa6g01435 243 Gene3D - 25 228 - -
Vifa6g01435 243 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 34 224 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01435 Vifa-Chr6 521537679 521539252 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01435 K01358 - gmx:100782585 360.918