Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01429 ATGGTTCCGCCGGCGCCACAACCGCCGAACCCCCAAGAAACCCAACAATTCCTCAGCTCCGTCCTCTCCCAGCGCGGTCCATCCGCCGTACCATACTCCGAAGACACGAAATGGCTCATCCGTCAACACTTGATCTCTCTCCTCACAACTTTCCCTTCCCTTCAACCCAAAACCGCTACCTTCACTCACAACGATGGCCGCACCGTTAATCTCCTCCAAGCCGACGGAACCATACCCATGACCTACCAATCCGTCACCTACAACATCCCCGTTGTTATCTGGCTCATGGAATCGTACCCTCGGCACCCACCTTGTGTCTATGTTAACCCTACCAGAGACATGGTCATCAAACGACCTCACCCTCATGTTGACCCTTCTGGTCTTGTTTCTGTTCCGTATTTGCATAATTGGATCTACCCTAGCTCCAATTTGGTTGATCTTGTTCTCTCTTTGAGTCTTGTCTTTGGTCGTGACCCTCCTCTTTTTTCCCAACGTATAACTAGTAATAACAACCCTAATCCCAATCCCAACCCTAACCCTAATCATAACCCTCATCAAAATCCAAATATCAATCAAAGTTCTAGTTTTCCAACATCTGGGTATCCTCATCCTGCTAGGAATAATTATCCTCCATCGCCTTATTCGCCTTCTCCTCGACCTTCTCATACGGAGGATCCTACTGAGGTTTTTAGGAGGAATGCTATTAACAAGCTTGTGGAGATGGTGCATAAAGATGTTATGTCTTTGAGGAAGACTAGAGAAGCTGAAATGGAGGGTTTGTTTGGTTTGCAAGGGGTTTTGAAGCAACGCGAGGGGGTTCTGGATAAAGGTGTGAAGGAAATGCGAGACGAGATGGAGGGTTTGGAACAGCAACTTCAGATGGTTTTGATGAATACTGATGTTTTAGAGGGTTGGTTGAGGGATAATCAAGGGAAGAAGTTGGAGAGTTTGGAGAATGTGGAGGATGCTTTTGAGTGTGTGGATGTTCTTTCTAAACAGATGCTTGATTGTACTGCTGCCGATTTGGCTATTGAAGATACTCTTTATGCATTGGATAAGGGTGTTCAGGTGGGAGCTGTGCCGTTTGATCAGTACTTGAGGAGTGTGAGGGTGTTGTCGAGGGAGCAGTTCTTTCACCGGGCTACGGCTGCTAAAGTTAGAGCTGCTCAGTTGCAGGCTCAGGTTGCTAATATTGCTGCACGGAGTCATCATTATGGTAGCTGA 1224 0.4722 MVPPAPQPPNPQETQQFLSSVLSQRGPSAVPYSEDTKWLIRQHLISLLTTFPSLQPKTATFTHNDGRTVNLLQADGTIPMTYQSVTYNIPVVIWLMESYPRHPPCVYVNPTRDMVIKRPHPHVDPSGLVSVPYLHNWIYPSSNLVDLVLSLSLVFGRDPPLFSQRITSNNNPNPNPNPNPNHNPHQNPNINQSSSFPTSGYPHPARNNYPPSPYSPSPRPSHTEDPTEVFRRNAINKLVEMVHKDVMSLRKTREAEMEGLFGLQGVLKQREGVLDKGVKEMRDEMEGLEQQLQMVLMNTDVLEGWLRDNQGKKLESLENVEDAFECVDVLSKQMLDCTAADLAIEDTLYALDKGVQVGAVPFDQYLRSVRVLSREQFFHRATAAKVRAAQLQAQVANIAARSHHYGS 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01429 407 SUPERFAMILY Endosomal sorting complex assembly domain 328 388 IPR037202 -
Vifa6g01429 407 Coils Coil 278 298 - -
Vifa6g01429 407 MobiDBLite consensus disorder prediction 164 226 - -
Vifa6g01429 407 PANTHER TUMOR SUSCEPTIBILITY GENE 101 PROTEIN-RELATED 10 395 - -
Vifa6g01429 407 Pfam UEV domain 41 161 IPR008883 GO:0015031|GO:0036211
Vifa6g01429 407 ProSiteProfiles Steadiness box (SB) domain profile. 328 396 IPR017916 -
Vifa6g01429 407 Gene3D Ubiquitin Conjugating Enzyme 7 162 IPR016135 -
Vifa6g01429 407 Gene3D - 329 389 - -
Vifa6g01429 407 ProSiteProfiles UEV domain profile. 21 165 IPR008883 GO:0015031|GO:0036211
Vifa6g01429 407 MobiDBLite consensus disorder prediction 184 202 - -
Vifa6g01429 407 MobiDBLite consensus disorder prediction 204 220 - -
Vifa6g01429 407 Pfam Vps23 core domain 323 385 IPR017916 -
Vifa6g01429 407 SUPERFAMILY UBC-like 24 161 IPR016135 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01429 K12183 - gmx:100778834 589.726