Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01415 ATGGGAGATGAAGGTACAGTGAGAAGTGTCACAAAGCATGTCACACCAGGTAAGGCTACTATATTGGCTCTTGGCAAGGCTTTCCCTCACCAGCTTGTGATGCAAGAGTATCTAGTTGATGGATATTTCAGAGACACTAATTGTGATAATCCTGAACTTAAGCAGAAACTTGCTAGACTTTGTAAGTATATAACAACTACGGTGAAAACGAGGTATGTTGTTATGTCCGAGGAGATACTAACAAAGTATCCAGAACTTGCTGTTGAAGGCGCGGCTACTGTAAAACAGCGTCTAGAGATATGTAACAAGGCAGTGACACAAATGGCAATTGAAGCTTCTCAAGTTTGCATAAAGAATTGGGGAGGATCTTTATCAGATATAACGCATGTGGTCTATGTTTCGTCTAGTGAAGCTAGGTTACCGGGTGGTGATCTTTACTTATCAAGAGGAATTGGACTGAGTCCTAAAGTTCAACGAGTCATGCTCTATTTCGCTGGTTGTTCTGGAGGTGTAGCTGGTTTGCGCGTTGCCAAAGACATAGCTGAAAACAACCCTGGTAGCAGAGTTTTGCTTGCTACTTCTGAGACTACAATTATTGGATTCAAGCCACCAAGTGCTGATAGACCCTATGATCTTGTTGGTGTGGCTCTTTTCGGAGACGGTGCTGGTGCTATGATAATTGGTTCAGACCCAAAATTGGAAACTGAGAAGCCGTTGTTTGAGCTTCATACTTCAGCTCAGGAGTTTATACCAGATACTGAGAAGAAAATAGATGGGAGATTGACAGAGGAGGGGATAAGCTTCACACTTGCGAGGGATCTTCCTCAGATAATTGAAGATAATGTTGAGGGATTCTGCGACAAACTAATGGATGTTGGTGGGTTGGAGAATAAGGAGTACAATAAGATGTTTTGGGCTGTTCATCCAGGAGGGCCTGCGATATTGAATCGCATGGAGAAACGGCTTGAGCTGTTGCCTGAGAAGCTGAATGCTAGTAGGAAAGCTCTTAGGGATTATGGAAATGCTAGCAGTAATACAATTGTTTATGTGCTGGAGTACATGATAGAAGAGGGAAACAAGATTAGAAAGGAAGGAGGAGGAGATCCTGAATGGGGATTGATACTTGCTTTTGGACCTGGAATCACTTTTGAGGGGATCCTAGCAAAGAACCTTCGTGCTTGA 1182 0.4306 MGDEGTVRSVTKHVTPGKATILALGKAFPHQLVMQEYLVDGYFRDTNCDNPELKQKLARLCKYITTTVKTRYVVMSEEILTKYPELAVEGAATVKQRLEICNKAVTQMAIEASQVCIKNWGGSLSDITHVVYVSSSEARLPGGDLYLSRGIGLSPKVQRVMLYFAGCSGGVAGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSADRPYDLVGVALFGDGAGAMIIGSDPKLETEKPLFELHTSAQEFIPDTEKKIDGRLTEEGISFTLARDLPQIIEDNVEGFCDKLMDVGGLENKEYNKMFWAVHPGGPAILNRMEKRLELLPEKLNASRKALRDYGNASSNTIVYVLEYMIEEGNKIRKEGGGDPEWGLILAFGPGITFEGILAKNLRA 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01415 393 CDD CHS_like 19 387 - -
Vifa6g01415 393 Pfam Chalcone and stilbene synthases, C-terminal domain 241 390 IPR012328 -
Vifa6g01415 393 SUPERFAMILY Thiolase-like 238 389 IPR016039 GO:0016746
Vifa6g01415 393 Gene3D - 239 390 IPR016039 GO:0016746
Vifa6g01415 393 SUPERFAMILY Thiolase-like 14 234 IPR016039 GO:0016746
Vifa6g01415 393 Pfam Chalcone and stilbene synthases, N-terminal domain 13 231 IPR001099 -
Vifa6g01415 393 FunFam Chalcone synthase 2 4 238 - -
Vifa6g01415 393 Gene3D - 3 238 IPR016039 GO:0016746
Vifa6g01415 393 PIRSF PKS_III 6 393 IPR011141 GO:0009058|GO:0016747
Vifa6g01415 393 FunFam Chalcone synthase 1 239 392 - -
Vifa6g01415 393 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 12 391 IPR011141 GO:0009058|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01415 Vifa-Chr6 516099651 516100937 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01415 89 378 Miscellaneous Gene Families AT4G34250 23.988 2.14e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01415 - - vun:114168705 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01415 6 516099651 516100937 Vifa6g01415 6 516099651 516100937 ECH